Variant report

Variant	rs6679259
Chromosome Location	chr1:92704761-92704762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11166127	1.00[CEU][hapmap]
rs11166542	1.00[CEU][hapmap]
rs12071093	1.00[CEU][hapmap]
rs12073894	1.00[CEU][hapmap]
rs12098095	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12142556	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17131599	1.00[CEU][hapmap]
rs17131621	1.00[CEU][hapmap]
rs41296171	0.87[EUR][1000 genomes]
rs41313389	0.87[EUR][1000 genomes]
rs4617457	0.88[AMR][1000 genomes]
rs56297403	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57177520	0.87[EUR][1000 genomes]
rs57217458	0.87[EUR][1000 genomes]
rs58142139	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59278612	0.87[EUR][1000 genomes]
rs60265386	0.87[EUR][1000 genomes]
rs60550001	0.87[EUR][1000 genomes]
rs60755573	0.87[EUR][1000 genomes]
rs60933677	0.87[EUR][1000 genomes]
rs61141829	0.87[EUR][1000 genomes]
rs61185080	0.87[EUR][1000 genomes]
rs61410146	0.87[EUR][1000 genomes]
rs6660858	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6661028	0.87[EUR][1000 genomes]
rs6662565	1.00[CEU][hapmap]
rs6672838	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6681027	1.00[CEU][hapmap]
rs6681213	0.87[EUR][1000 genomes]
rs6691918	1.00[CEU][hapmap]
rs6694248	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6695475	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6702975	0.87[EUR][1000 genomes]
rs6704484	0.87[EUR][1000 genomes]
rs72958740	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72958746	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72958774	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72958781	0.87[EUR][1000 genomes]
rs72958796	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72960815	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72960831	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72960835	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72960847	0.87[EUR][1000 genomes]
rs72960860	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72960870	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72962640	0.87[EUR][1000 genomes]
rs74101123	0.87[EUR][1000 genomes]
rs74101131	0.87[EUR][1000 genomes]
rs74101133	0.87[EUR][1000 genomes]
rs74101146	0.87[EUR][1000 genomes]
rs74101152	0.87[EUR][1000 genomes]
rs74101157	0.87[EUR][1000 genomes]
rs74102832	0.87[EUR][1000 genomes]
rs74102844	0.87[EUR][1000 genomes]
rs74102853	0.87[EUR][1000 genomes]
rs74102861	0.87[EUR][1000 genomes]
rs7513631	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7519603	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7520555	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7525174	0.87[EUR][1000 genomes]
rs7529971	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7534750	0.87[EUR][1000 genomes]
rs7535181	1.00[CEU][hapmap]
rs7542362	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7542736	1.00[CEU][hapmap]
rs9661440	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv870667	chr1:92697188-92813741	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92704400-92705400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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