Variant report

Variant	rs6679399
Chromosome Location	chr1:211093346-211093347
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6695821	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211090000-211094000	Weak transcription	Liver	Liver
3	chr1:211091400-211093400	Strong transcription	HSMM	muscle
4	chr1:211091600-211096000	Weak transcription	HSMMtube	muscle
5	chr1:211091800-211096200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211092000-211096400	Weak transcription	Brain Anterior Caudate	brain
7	chr1:211092000-211096400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:211093000-211093600	Enhancers	K562	blood
9	chr1:211093200-211093400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:211093200-211093400	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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