Variant report

Variant	rs6680659
Chromosome Location	chr1:225276571-225276572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 311 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:306)

rs_ID	r²[population]
rs10399821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10399941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10495231	0.92[ASN][1000 genomes]
rs10495232	1.00[EUR][1000 genomes]
rs1078794	1.00[EUR][1000 genomes]
rs10799293	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10915744	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10915747	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10915748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10915749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10915750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10915751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10915757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10915758	0.85[ASN][1000 genomes]
rs10915761	0.92[ASN][1000 genomes]
rs10915762	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10915763	0.92[ASN][1000 genomes]
rs10915778	1.00[ASN][1000 genomes]
rs10915780	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10915781	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10915785	1.00[ASN][1000 genomes]
rs10915786	0.96[ASN][1000 genomes]
rs10915788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10915789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10915795	0.96[ASN][1000 genomes]
rs10915799	0.96[ASN][1000 genomes]
rs10915800	0.96[ASN][1000 genomes]
rs10915801	0.96[ASN][1000 genomes]
rs10915808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11484699	0.96[ASN][1000 genomes]
rs11484714	0.96[ASN][1000 genomes]
rs11484715	0.96[ASN][1000 genomes]
rs11487462	1.00[ASN][1000 genomes]
rs11487470	0.96[ASN][1000 genomes]
rs11805350	1.00[EUR][1000 genomes]
rs12059834	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12061133	1.00[ASN][1000 genomes]
rs12061172	0.92[ASN][1000 genomes]
rs12061265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12062461	1.00[ASN][1000 genomes]
rs12064443	0.96[ASN][1000 genomes]
rs12064759	0.96[ASN][1000 genomes]
rs12064870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12066443	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12066458	0.96[ASN][1000 genomes]
rs12067725	0.96[ASN][1000 genomes]
rs12067756	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12068014	0.96[ASN][1000 genomes]
rs12068731	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12069353	0.96[ASN][1000 genomes]
rs12069461	0.96[ASN][1000 genomes]
rs12069808	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070493	0.96[ASN][1000 genomes]
rs12071270	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12071453	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12071776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072713	0.85[ASN][1000 genomes]
rs12072720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12073050	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12073648	1.00[ASN][1000 genomes]
rs12074130	0.85[ASN][1000 genomes]
rs12074382	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12074477	0.92[ASN][1000 genomes]
rs12074718	0.96[ASN][1000 genomes]
rs12075769	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078470	1.00[ASN][1000 genomes]
rs12078559	1.00[ASN][1000 genomes]
rs12078696	0.96[ASN][1000 genomes]
rs12079258	0.96[ASN][1000 genomes]
rs12080062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081545	0.96[ASN][1000 genomes]
rs12082397	0.85[ASN][1000 genomes]
rs12082837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12084177	1.00[ASN][1000 genomes]
rs12084937	1.00[ASN][1000 genomes]
rs12085406	0.96[ASN][1000 genomes]
rs12086122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12086185	0.96[ASN][1000 genomes]
rs12086373	0.85[ASN][1000 genomes]
rs12086473	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087715	1.00[ASN][1000 genomes]
rs12088357	0.96[ASN][1000 genomes]
rs12088836	0.92[ASN][1000 genomes]
rs12089294	0.96[ASN][1000 genomes]
rs12089735	0.96[ASN][1000 genomes]
rs12091019	0.96[ASN][1000 genomes]
rs12091058	0.96[ASN][1000 genomes]
rs12091059	0.96[ASN][1000 genomes]
rs12092293	0.96[ASN][1000 genomes]
rs12092671	1.00[ASN][1000 genomes]
rs12093086	0.85[ASN][1000 genomes]
rs12093545	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs12094453	0.96[ASN][1000 genomes]
rs12094780	0.96[ASN][1000 genomes]
rs12095812	0.85[ASN][1000 genomes]
rs12095892	1.00[ASN][1000 genomes]
rs12096616	1.00[ASN][1000 genomes]
rs12097555	0.96[ASN][1000 genomes]
rs12097593	1.00[EUR][1000 genomes]
rs12239937	1.00[EUR][1000 genomes]
rs1395115	1.00[EUR][1000 genomes]
rs1480102	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480108	0.96[ASN][1000 genomes]
rs1482278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1580956	1.00[EUR][1000 genomes]
rs1600530	0.96[ASN][1000 genomes]
rs16844321	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844324	1.00[EUR][1000 genomes]
rs16844328	1.00[EUR][1000 genomes]
rs16844331	1.00[EUR][1000 genomes]
rs16844341	1.00[ASN][1000 genomes]
rs16844347	1.00[EUR][1000 genomes]
rs16844357	1.00[EUR][1000 genomes]
rs16844389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16844455	0.96[ASN][1000 genomes]
rs16858965	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1842335	0.96[ASN][1000 genomes]
rs2127558	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2170110	1.00[ASN][1000 genomes]
rs2244108	1.00[EUR][1000 genomes]
rs2244109	1.00[EUR][1000 genomes]
rs2244198	1.00[EUR][1000 genomes]
rs2245097	1.00[EUR][1000 genomes]
rs2254430	1.00[EUR][1000 genomes]
rs2449262	1.00[EUR][1000 genomes]
rs2449264	1.00[EUR][1000 genomes]
rs2449265	1.00[EUR][1000 genomes]
rs2449267	1.00[EUR][1000 genomes]
rs2449268	1.00[EUR][1000 genomes]
rs2449270	1.00[EUR][1000 genomes]
rs2449271	1.00[EUR][1000 genomes]
rs2449272	1.00[EUR][1000 genomes]
rs2449275	1.00[EUR][1000 genomes]
rs2449277	1.00[EUR][1000 genomes]
rs2449278	1.00[EUR][1000 genomes]
rs2449279	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2449283	1.00[EUR][1000 genomes]
rs2449284	1.00[EUR][1000 genomes]
rs2449286	1.00[EUR][1000 genomes]
rs2449288	1.00[EUR][1000 genomes]
rs2449289	1.00[EUR][1000 genomes]
rs2449290	1.00[EUR][1000 genomes]
rs2449294	1.00[EUR][1000 genomes]
rs2449305	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2449306	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2449309	1.00[EUR][1000 genomes]
rs2449312	1.00[EUR][1000 genomes]
rs2449314	1.00[EUR][1000 genomes]
rs2449317	1.00[EUR][1000 genomes]
rs2449319	1.00[EUR][1000 genomes]
rs2449321	1.00[EUR][1000 genomes]
rs2449323	1.00[EUR][1000 genomes]
rs2449324	1.00[EUR][1000 genomes]
rs2456338	1.00[EUR][1000 genomes]
rs2456343	1.00[EUR][1000 genomes]
rs2456344	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2456346	1.00[EUR][1000 genomes]
rs2456350	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2456352	1.00[EUR][1000 genomes]
rs2456354	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2489299	1.00[EUR][1000 genomes]
rs2489305	1.00[EUR][1000 genomes]
rs2489307	1.00[EUR][1000 genomes]
rs2489309	1.00[EUR][1000 genomes]
rs2489315	1.00[EUR][1000 genomes]
rs2489316	1.00[EUR][1000 genomes]
rs2489317	1.00[EUR][1000 genomes]
rs2489318	1.00[EUR][1000 genomes]
rs2489319	1.00[EUR][1000 genomes]
rs2489321	1.00[EUR][1000 genomes]
rs2489323	1.00[EUR][1000 genomes]
rs2489326	1.00[EUR][1000 genomes]
rs2489329	1.00[EUR][1000 genomes]
rs2489331	1.00[EUR][1000 genomes]
rs2489333	1.00[EUR][1000 genomes]
rs2489334	1.00[EUR][1000 genomes]
rs2489335	1.00[EUR][1000 genomes]
rs2489336	1.00[EUR][1000 genomes]
rs2489339	1.00[EUR][1000 genomes]
rs2489340	1.00[EUR][1000 genomes]
rs2489342	1.00[EUR][1000 genomes]
rs2489345	1.00[EUR][1000 genomes]
rs2489347	1.00[EUR][1000 genomes]
rs2489349	1.00[EUR][1000 genomes]
rs2489350	1.00[EUR][1000 genomes]
rs2489351	1.00[EUR][1000 genomes]
rs2489354	1.00[EUR][1000 genomes]
rs2489356	1.00[EUR][1000 genomes]
rs2489357	1.00[EUR][1000 genomes]
rs2489358	1.00[EUR][1000 genomes]
rs2489359	1.00[EUR][1000 genomes]
rs2489360	1.00[EUR][1000 genomes]
rs2501065	1.00[EUR][1000 genomes]
rs2501074	1.00[EUR][1000 genomes]
rs2501076	1.00[EUR][1000 genomes]
rs2501077	1.00[EUR][1000 genomes]
rs2501079	1.00[EUR][1000 genomes]
rs2501088	1.00[EUR][1000 genomes]
rs2501103	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2501104	1.00[EUR][1000 genomes]
rs2501112	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501113	1.00[EUR][1000 genomes]
rs2501117	1.00[EUR][1000 genomes]
rs2501121	1.00[EUR][1000 genomes]
rs2501124	1.00[EUR][1000 genomes]
rs2501128	1.00[EUR][1000 genomes]
rs2501136	1.00[EUR][1000 genomes]
rs2501137	1.00[EUR][1000 genomes]
rs2501142	1.00[EUR][1000 genomes]
rs2501144	1.00[EUR][1000 genomes]
rs2501148	1.00[EUR][1000 genomes]
rs2501150	1.00[EUR][1000 genomes]
rs2501152	1.00[EUR][1000 genomes]
rs2501157	1.00[EUR][1000 genomes]
rs2516334	1.00[EUR][1000 genomes]
rs2662910	1.00[EUR][1000 genomes]
rs2662911	1.00[EUR][1000 genomes]
rs2662913	1.00[EUR][1000 genomes]
rs2802546	1.00[EUR][1000 genomes]
rs2802547	1.00[EUR][1000 genomes]
rs2802736	1.00[EUR][1000 genomes]
rs28789844	1.00[EUR][1000 genomes]
rs28793649	1.00[ASN][1000 genomes]
rs28871966	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2929627	1.00[EUR][1000 genomes]
rs2929629	1.00[EUR][1000 genomes]
rs2929632	1.00[EUR][1000 genomes]
rs3102105	1.00[EUR][1000 genomes]
rs3991375	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4256778	1.00[EUR][1000 genomes]
rs4275419	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475714	1.00[EUR][1000 genomes]
rs4639722	1.00[EUR][1000 genomes]
rs55708629	0.92[ASN][1000 genomes]
rs56302122	0.92[ASN][1000 genomes]
rs57262741	1.00[ASN][1000 genomes]
rs58355180	1.00[EUR][1000 genomes]
rs58823550	1.00[EUR][1000 genomes]
rs59730608	1.00[EUR][1000 genomes]
rs59730777	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59839860	1.00[EUR][1000 genomes]
rs60434067	1.00[EUR][1000 genomes]
rs60727542	1.00[EUR][1000 genomes]
rs60782238	1.00[ASN][1000 genomes]
rs61269802	1.00[EUR][1000 genomes]
rs61329501	1.00[EUR][1000 genomes]
rs61483735	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426164	1.00[EUR][1000 genomes]
rs6656178	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662177	0.92[ASN][1000 genomes]
rs6666025	1.00[ASN][1000 genomes]
rs6666664	1.00[EUR][1000 genomes]
rs6670335	1.00[EUR][1000 genomes]
rs6673779	1.00[EUR][1000 genomes]
rs6675157	1.00[EUR][1000 genomes]
rs6675162	1.00[EUR][1000 genomes]
rs6680233	0.92[ASN][1000 genomes]
rs6683197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6689608	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693680	1.00[EUR][1000 genomes]
rs6694400	1.00[EUR][1000 genomes]
rs6698942	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699883	1.00[EUR][1000 genomes]
rs6700281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6704159	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74146611	0.92[ASN][1000 genomes]
rs74147131	1.00[ASN][1000 genomes]
rs74149426	0.85[ASN][1000 genomes]
rs74149428	0.85[ASN][1000 genomes]
rs74149429	0.81[ASN][1000 genomes]
rs74149436	0.92[ASN][1000 genomes]
rs7418261	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512125	1.00[EUR][1000 genomes]
rs7515136	1.00[EUR][1000 genomes]
rs7519130	1.00[EUR][1000 genomes]
rs7523371	1.00[EUR][1000 genomes]
rs7524227	1.00[EUR][1000 genomes]
rs7525497	1.00[EUR][1000 genomes]
rs7526764	1.00[EUR][1000 genomes]
rs7527885	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7533311	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533415	1.00[EUR][1000 genomes]
rs7533616	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7535962	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536912	1.00[EUR][1000 genomes]
rs7537947	1.00[EUR][1000 genomes]
rs7543666	0.96[ASN][1000 genomes]
rs7544960	1.00[EUR][1000 genomes]
rs7550540	1.00[ASN][1000 genomes]
rs7555397	1.00[EUR][1000 genomes]
rs769297	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9286991	1.00[EUR][1000 genomes]
rs9426101	1.00[EUR][1000 genomes]
rs9426103	1.00[EUR][1000 genomes]
rs9426104	1.00[EUR][1000 genomes]
rs9426147	1.00[EUR][1000 genomes]
rs9426156	1.00[EUR][1000 genomes]
rs9426159	1.00[EUR][1000 genomes]
rs9660934	1.00[EUR][1000 genomes]
rs9725252	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9803691	1.00[EUR][1000 genomes]
rs9919164	1.00[ASN][1000 genomes]
rs9919334	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225256400-225277400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:225261200-225279200	Weak transcription	Pancreas	Pancrea
3	chr1:225275600-225312600	Weak transcription	Ovary	ovary

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