Variant report

Variant	rs6683092
Chromosome Location	chr1:94929971-94929972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94816155..94817816-chr1:94928944..94931018,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1624081	1.00[MEX][hapmap]
rs17100426	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv546851	chr1:94916649-94941376	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94913800-94974200	Weak transcription	Psoas Muscle	Psoas
2	chr1:94914200-94951800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:94914800-94985800	Weak transcription	NHLF	lung
4	chr1:94915400-94930400	Weak transcription	Brain Anterior Caudate	brain
5	chr1:94915400-94934000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:94915400-94993200	Weak transcription	HSMMtube	muscle
7	chr1:94915800-94930600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:94915800-94935000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:94915800-94955400	Weak transcription	NHDF-Ad	bronchial
10	chr1:94915800-94956600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:94916000-94930000	Weak transcription	Brain Hippocampus Middle	brain
12	chr1:94916000-94932000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:94916000-94941800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:94916000-94957200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:94916000-94969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:94916000-94970000	Weak transcription	Ovary	ovary
17	chr1:94916000-94970000	Weak transcription	Spleen	Spleen
18	chr1:94916000-94973800	Weak transcription	Pancreas	Pancrea
19	chr1:94916000-94993000	Weak transcription	Esophagus	oesophagus
20	chr1:94916200-94968400	Weak transcription	Gastric	stomach
21	chr1:94916200-94971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:94916200-94974200	Weak transcription	Lung	lung
23	chr1:94916400-94930000	Weak transcription	Osteobl	bone
24	chr1:94917200-94964400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr1:94917600-94930000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:94917800-94971800	Weak transcription	NHEK	skin
27	chr1:94917800-95000800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:94918000-94942000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr1:94918000-94957000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr1:94918200-94930400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr1:94918800-94941600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr1:94919000-94942800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr1:94920600-94948400	Weak transcription	Small Intestine	intestine
34	chr1:94920800-94930400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:94921000-94957800	Weak transcription	Brain Germinal Matrix	brain
36	chr1:94922400-94930400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr1:94923000-94932000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr1:94923200-94942000	Weak transcription	Right Ventricle	heart
39	chr1:94923400-94930000	Weak transcription	Fetal Intestine Small	intestine
40	chr1:94923600-94930000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr1:94923600-94956400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr1:94923600-94956600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr1:94923800-94930000	Weak transcription	Left Ventricle	heart
44	chr1:94923800-94941800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:94923800-94948000	Weak transcription	NH-A	brain
46	chr1:94923800-95000400	Weak transcription	Aorta	Aorta
47	chr1:94924000-94930400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr1:94924000-94947000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr1:94924000-94964400	Weak transcription	GM12878-XiMat	blood
50	chr1:94924400-94930400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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