Variant report

Variant	rs668408
Chromosome Location	chr11:57016734-57016735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:56883857..56884825-chr11:57016233..57017822,10	MCF-7	breast:
2	chr11:56769288..56770290-chr11:57016463..57017822,3	K562	blood:
3	chr11:56883739..56884861-chr11:57016166..57017852,7	K562	blood:
4	chr11:56898304..56899186-chr11:57016267..57017234,5	MCF-7	breast:
5	chr11:56608383..56609306-chr11:57016176..57017128,2	MCF-7	breast:
6	chr11:56898268..56899163-chr11:57016603..57017757,8	K562	blood:
7	chr11:56608400..56609354-chr11:57016455..57017401,5	MCF-7	breast:
8	chr11:56897171..56899424-chr11:57016274..57018526,19	MCF-7	breast:
9	chr11:56891684..56895187-chr11:57015179..57019419,3	K562	blood:
10	chr11:57016610..57017236-chr11:57045093..57045790,2	K562	blood:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10792093	0.86[ASN][1000 genomes]
rs10896598	0.89[EUR][1000 genomes]
rs10896613	0.86[ASN][1000 genomes]
rs11228973	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228991	0.82[EUR][1000 genomes]
rs11229017	0.86[ASN][1000 genomes]
rs11606862	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12272063	0.86[ASN][1000 genomes]
rs2155232	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518272	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67221365	0.86[ASN][1000 genomes]
rs7102952	0.86[ASN][1000 genomes]
rs7107352	0.86[ASN][1000 genomes]
rs73470506	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57013000-57017600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:57013200-57016800	Weak transcription	HUVEC	blood vessel
3	chr11:57016000-57016800	Enhancers	A549	lung
4	chr11:57016200-57017000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:57016200-57017000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:57016200-57017000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:57016200-57017000	Enhancers	Fetal Muscle Trunk	muscle
8	chr11:57016200-57017200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:57016200-57017200	Enhancers	Stomach Smooth Muscle	stomach
10	chr11:57016400-57016800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr11:57016400-57016800	Enhancers	NHEK	skin
12	chr11:57016400-57017000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:57016400-57017000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr11:57016400-57017000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:57016400-57017000	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr11:57016400-57017000	Enhancers	Fetal Muscle Leg	muscle
17	chr11:57016400-57017000	Enhancers	Left Ventricle	heart
18	chr11:57016400-57017000	Enhancers	Lung	lung
19	chr11:57016400-57017000	Enhancers	Right Atrium	heart
20	chr11:57016400-57017000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr11:57016400-57017000	Enhancers	Spleen	Spleen
22	chr11:57016400-57017200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:57016400-57017200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:57016400-57017200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:57016400-57017200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr11:57016400-57017200	Enhancers	Fetal Lung	lung
27	chr11:57016400-57017200	Enhancers	Fetal Stomach	stomach
28	chr11:57016400-57017200	Enhancers	HSMM	muscle
29	chr11:57016400-57017400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:57016400-57017600	Enhancers	K562	blood
31	chr11:57016400-57017800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:57016400-57019400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:57016400-57019600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:57016400-57020800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:57016400-57020800	Enhancers	HMEC	breast
36	chr11:57016600-57017000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:57016600-57017000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:57016600-57017200	Enhancers	Liver	Liver
39	chr11:57016600-57017200	Enhancers	Fetal Brain Male	brain
40	chr11:57016600-57017800	Enhancers	Placenta	Placenta

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