Variant report

Variant	rs668521
Chromosome Location	chr12:10982827-10982828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr12:10982592-10982969	K562	blood:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
2	CEBPB	chr12:10982615-10982928	H1-hESC	embryonic stem cell:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
3	CEBPB	chr12:10982537-10982911	A549	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
4	CEBPB	chr12:10982600-10982974	HepG2	liver:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
5	CEBPB	chr12:10982540-10982996	ECC-1	luminal epithelium:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
6	CEBPB	chr12:10982567-10982993	ECC-1	luminal epithelium:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
7	CEBPB	chr12:10982604-10982971	IMR90	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
8	CEBPB	chr12:10982601-10982894	A549	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
9	CEBPB	chr12:10982557-10982917	MCF-7	breast:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
10	CEBPB	chr12:10982596-10982976	A549	lung:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794
11	CEBPB	chr12:10982605-10982977	Hela-S3	cervix:	n/a	chr12:10982784-10982793 chr12:10982782-10982795 chr12:10982784-10982793 chr12:10982782-10982793 chr12:10982784-10982793 chr12:10982784-10982793 chr12:10982783-10982794

Variant related genes	Relation type
TAS2R10	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1013312	0.82[ASN][1000 genomes]
rs1047699	0.88[ASN][1000 genomes]
rs10734841	0.88[ASN][1000 genomes]
rs10743927	0.88[ASN][1000 genomes]
rs10743929	0.82[ASN][1000 genomes]
rs10743930	0.82[ASN][1000 genomes]
rs10743931	0.82[ASN][1000 genomes]
rs10772369	0.85[ASN][1000 genomes]
rs10772371	0.82[ASN][1000 genomes]
rs10845220	0.88[ASN][1000 genomes]
rs10845223	0.82[ASN][1000 genomes]
rs10845224	0.82[ASN][1000 genomes]
rs11054053	0.82[ASN][1000 genomes]
rs12371547	0.82[ASN][1000 genomes]
rs1520225	0.82[ASN][1000 genomes]
rs1548804	0.88[ASN][1000 genomes]
rs1607694	0.82[ASN][1000 genomes]
rs2110098	0.82[ASN][1000 genomes]
rs2159899	0.88[ASN][1000 genomes]
rs2159900	0.85[ASN][1000 genomes]
rs2192139	0.82[ASN][1000 genomes]
rs2232958	1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2418105	0.82[AFR][1000 genomes]
rs2418106	0.88[ASN][1000 genomes]
rs2418214	0.82[ASN][1000 genomes]
rs2418215	0.82[ASN][1000 genomes]
rs2418218	0.85[ASN][1000 genomes]
rs2900552	0.82[ASN][1000 genomes]
rs3759250	0.91[ASN][1000 genomes]
rs3759251	0.97[ASN][1000 genomes]
rs3906864	0.95[AFR][1000 genomes]
rs4281556	0.82[ASN][1000 genomes]
rs4763217	0.82[ASN][1000 genomes]
rs58051461	0.91[ASN][1000 genomes]
rs58836988	0.80[ASN][1000 genomes]
rs592864	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60547308	0.91[ASN][1000 genomes]
rs60652912	1.00[ASN][1000 genomes]
rs612456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640372	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646494	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488328	0.85[AFR][1000 genomes]
rs654834	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs741092	0.88[ASN][1000 genomes]
rs763839	0.88[ASN][1000 genomes]
rs7957888	0.88[ASN][1000 genomes]
rs7978300	0.82[ASN][1000 genomes]
rs953950	0.88[ASN][1000 genomes]
rs965243	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv898776	chr12:10909412-11032045	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10973600-11009600	Weak transcription	HSMM	muscle

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