Variant report

Variant	rs6685217
Chromosome Location	chr1:211260431-211260432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11119677	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11119679	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12027884	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12124026	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs1416065	0.81[ASW][hapmap];0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2211038	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4265492	0.91[CHB][hapmap]
rs4511184	0.86[ASN][1000 genomes]
rs4592307	0.91[CHB][hapmap]
rs4620600	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951493	0.91[CHB][hapmap]
rs4951495	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs4951499	0.80[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4951502	0.86[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951504	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951716	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6685217	G0S2	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211249400-211261200	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:211249400-211263600	Weak transcription	Brain Anterior Caudate	brain
3	chr1:211250000-211271000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:211250400-211265000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:211256000-211263400	Strong transcription	HSMMtube	muscle
6	chr1:211256400-211285400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211256800-211276600	Weak transcription	Brain Angular Gyrus	brain
8	chr1:211256800-211277000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:211256800-211282400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:211257800-211263800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:211259800-211260600	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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