The 2.0 version of rSNPBase

Variant report

Variant rs6686744
Chromosome Location chr1:172788745-172788746
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172786400-172789400 Enhancers Primary Natural Killer cells fromperipheralblood blood
2 chr1:172786800-172789400 Enhancers Primary T killer naive cells fromperipheralblood blood
3 chr1:172787000-172789200 Enhancers Primary hematopoietic stem cells short term culture blood
4 chr1:172787400-172789000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr1:172787400-172789000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr1:172787400-172789400 Enhancers Primary hematopoietic stem cells blood
7 chr1:172787400-172793800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:172787600-172788800 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
9 chr1:172787600-172789000 Enhancers Fetal Muscle Leg muscle
10 chr1:172787600-172789000 Enhancers Rectal Mucosa Donor 31 rectum
11 chr1:172787600-172789200 Enhancers Primary T cells from cord blood blood
12 chr1:172787600-172793800 Enhancers NHDF-Ad bronchial
13 chr1:172787800-172788800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
14 chr1:172787800-172789000 Enhancers Primary monocytes fromperipheralblood blood
15 chr1:172787800-172789000 Enhancers Primary mononuclear cells fromperipheralblood Blood
16 chr1:172787800-172789000 Enhancers Monocytes-CD14+_RO01746 blood
17 chr1:172787800-172789200 Enhancers NHLF lung
18 chr1:172787800-172791200 Enhancers Osteobl bone
19 chr1:172788000-172788800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
20 chr1:172788000-172789000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
21 chr1:172788000-172789000 Enhancers Fetal Thymus thymus
22 chr1:172788000-172789200 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
23 chr1:172788000-172789200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
24 chr1:172788200-172788800 Active TSS Primary T helper naive cells fromperipheralblood blood
25 chr1:172788400-172788800 Active TSS Primary T cells fromperipheralblood blood
26 chr1:172788400-172789000 Flanking Active TSS Primary B cells from cord blood blood
27 chr1:172788400-172789000 Active TSS Rectal Smooth Muscle rectum
28 chr1:172788400-172790200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:172788400-172790400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:172788400-172790400 Weak transcription K562 blood
31 chr1:172788400-172790600 Weak transcription Brain Hippocampus Middle brain
32 chr1:172788400-172793600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:172788400-172795400 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr1:172788600-172788800 Enhancers Primary B cells from peripheral blood blood
35 chr1:172788600-172788800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
36 chr1:172788600-172788800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
37 chr1:172788600-172789000 Weak transcription Muscle Satellite Cultured Cells --
38 chr1:172788600-172789000 Enhancers Duodenum Mucosa Duodenum
39 chr1:172788600-172789000 Enhancers Rectal Mucosa Donor 29 rectum
40 chr1:172788600-172789400 Enhancers Dnd41 blood
41 chr1:172788600-172789400 Weak transcription HSMMtube muscle
42 chr1:172788600-172789600 Enhancers Primary T helper cells fromperipheralblood blood
43 chr1:172788600-172789600 Flanking Active TSS GM12878-XiMat blood
44 chr1:172788600-172790200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:172788600-172790200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:172788600-172790400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:172788600-172790400 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015