Variant report

Variant	rs6688920
Chromosome Location	chr1:211205507-211205508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211203078..211205733-chr1:211206241..211207793,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11119654	0.86[ASN][1000 genomes]
rs11119668	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11806852	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12022715	0.86[ASN][1000 genomes]
rs12022739	0.86[ASN][1000 genomes]
rs12025525	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12026311	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12026374	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12027535	0.94[ASN][1000 genomes]
rs12030715	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12039302	0.83[ASN][1000 genomes]
rs12043937	0.84[ASN][1000 genomes]
rs12043952	0.82[ASN][1000 genomes]
rs12046391	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12070402	0.86[ASN][1000 genomes]
rs12406562	0.84[ASN][1000 genomes]
rs12407609	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1501544	0.84[ASN][1000 genomes]
rs1501545	0.84[ASN][1000 genomes]
rs1501548	0.86[ASN][1000 genomes]
rs1501549	0.86[ASN][1000 genomes]
rs1501550	0.86[ASN][1000 genomes]
rs1532682	0.86[ASN][1000 genomes]
rs4570464	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4575146	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56999636	0.84[ASN][1000 genomes]
rs57045219	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57179129	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58255417	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs61848562	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61848568	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61849015	0.83[ASN][1000 genomes]
rs61849024	0.84[ASN][1000 genomes]
rs61850228	0.94[ASN][1000 genomes]
rs6540638	0.83[ASN][1000 genomes]
rs6540648	0.94[ASN][1000 genomes]
rs6659135	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6666287	0.83[ASN][1000 genomes]
rs6666342	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6680997	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6689715	0.86[ASN][1000 genomes]
rs7514606	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7515316	0.82[ASN][1000 genomes]
rs7518841	0.83[ASN][1000 genomes]
rs7523929	0.82[ASN][1000 genomes]
rs7551412	0.82[ASN][1000 genomes]
rs7553997	0.84[ASN][1000 genomes]
rs7554723	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4410	chr1:211193724-211210571	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
3	chr1:211194400-211209200	Weak transcription	HSMM	muscle
4	chr1:211198800-211209600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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