Variant report

Variant	rs6689215
Chromosome Location	chr1:94241111-94241112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:94240840-94241203	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:94240797-94241188	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr1:94240484-94241453	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr1:94240455-94241697	MCF10A-Er-Src	breast:	n/a	chr1:94241634-94241645 chr1:94240570-94240593 chr1:94241531-94241539
5	CBX3	chr1:94240555-94241323	HCT-116	colon:	n/a	n/a
6	MAX	chr1:94240827-94241114	Hela-S3	cervix:	n/a	n/a
7	FOSL1	chr1:94240689-94241419	HCT-116	colon:	n/a	n/a
8	FOS	chr1:94240802-94241438	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr1:94240814-94241203	MCF10A-Er-Src	breast:	n/a	n/a
10	E2F4	chr1:94240844-94241225	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr1:94240840-94241131	MCF10A-Er-Src	breast:	n/a	n/a
12	YY1	chr1:94240869-94241141	HCT-116	colon:	n/a	n/a
13	POLR2A	chr1:94240040-94241349	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr1:94240728-94241118	Hela-S3	cervix:	n/a	n/a
15	MYC	chr1:94240270-94241249	MCF10A-Er-Src	breast:	n/a	n/a
16	CEBPB	chr1:94240879-94241171	Hela-S3	cervix:	n/a	n/a
17	ELK4	chr1:94240953-94241259	Hela-S3	cervix:	n/a	chr1:94241054-94241065
18	MAX	chr1:94240532-94241371	HCT-116	colon:	n/a	n/a
19	SP1	chr1:94240535-94241330	HCT-116	colon:	n/a	n/a
20	POLR2A	chr1:94240623-94241273	HCT-116	colon:	n/a	n/a
21	TBP	chr1:94240994-94241207	Hela-S3	cervix:	n/a	n/a
22	NR3C1	chr1:94240742-94241130	A549	lung:	n/a	chr1:94241054-94241068
23	STAT3	chr1:94240824-94241115	MCF10A-Er-Src	breast:	n/a	n/a
24	CEBPB	chr1:94240586-94241385	HCT-116	colon:	n/a	n/a
25	POLR2A	chr1:94236714-94241999	MCF10A-Er-Src	breast:	n/a	n/a
26	JUND	chr1:94240533-94241381	HCT-116	colon:	n/a	n/a
27	FOSL1	chr1:94240505-94241365	HCT-116	colon:	n/a	n/a
28	MAX	chr1:94240483-94241349	HCT-116	colon:	n/a	n/a
29	FOS	chr1:94240803-94241162	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000230439	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10874795	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11164994	0.94[ASN][1000 genomes]
rs11165001	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165019	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12076307	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12079584	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12239830	0.89[ASN][1000 genomes]
rs17100397	0.89[ASN][1000 genomes]
rs17110394	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110408	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17304770	0.89[ASN][1000 genomes]
rs2223908	0.94[ASN][1000 genomes]
rs4526623	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4615846	0.93[EUR][1000 genomes]
rs57870303	0.94[ASN][1000 genomes]
rs61425457	0.89[ASN][1000 genomes]
rs61781054	0.94[ASN][1000 genomes]
rs61781055	0.94[ASN][1000 genomes]
rs61781056	0.94[ASN][1000 genomes]
rs61781057	0.94[ASN][1000 genomes]
rs61782398	0.94[ASN][1000 genomes]
rs61782399	0.94[ASN][1000 genomes]
rs61782400	0.94[ASN][1000 genomes]
rs61782403	0.89[ASN][1000 genomes]
rs61782404	0.89[ASN][1000 genomes]
rs61782405	0.89[ASN][1000 genomes]
rs61782410	0.89[ASN][1000 genomes]
rs61782413	0.89[ASN][1000 genomes]
rs61782450	0.89[ASN][1000 genomes]
rs61782451	0.83[ASN][1000 genomes]
rs61782452	0.89[EUR][1000 genomes]
rs6541394	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6660794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6671839	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6674149	0.94[ASN][1000 genomes]
rs6689746	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6703468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs717913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72723114	0.94[ASN][1000 genomes]
rs72723118	0.94[ASN][1000 genomes]
rs72723125	0.94[ASN][1000 genomes]
rs72723138	0.94[ASN][1000 genomes]
rs72723157	0.89[ASN][1000 genomes]
rs72723165	0.89[ASN][1000 genomes]
rs72723169	0.83[ASN][1000 genomes]
rs72967397	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7555914	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
2	chr1:94235600-94241600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:94235600-94245200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:94235600-94245200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:94235800-94241600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:94235800-94245200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:94235800-94245200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:94236000-94244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:94236000-94245400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:94236000-94245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:94236200-94247400	Weak transcription	Fetal Intestine Small	intestine
12	chr1:94239400-94242800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:94239400-94245200	Weak transcription	Psoas Muscle	Psoas
14	chr1:94239600-94242200	Weak transcription	HepG2	liver
15	chr1:94240000-94241200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:94240000-94241200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:94240000-94241200	Enhancers	Fetal Stomach	stomach
18	chr1:94240400-94241200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:94240600-94241400	Enhancers	Brain Anterior Caudate	brain
20	chr1:94240600-94241800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:94240600-94241800	Enhancers	Brain Hippocampus Middle	brain
22	chr1:94240600-94243000	Enhancers	A549	lung
23	chr1:94240800-94241200	Bivalent Enhancer	Fetal Lung	lung
24	chr1:94240800-94241200	Enhancers	Fetal Muscle Trunk	muscle
25	chr1:94240800-94241600	Enhancers	Fetal Brain Male	brain
26	chr1:94240800-94244600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:94240800-94245000	Weak transcription	Osteobl	bone
28	chr1:94241000-94241600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr1:94241000-94242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:94241000-94242800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr1:94241000-94243000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:94241000-94243000	Enhancers	NHEK	skin
33	chr1:94241000-94243600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr1:94241000-94243600	Weak transcription	Placenta	Placenta
35	chr1:94241000-94244600	Weak transcription	NH-A	brain
36	chr1:94241000-94244800	Weak transcription	HSMM	muscle
37	chr1:94241000-94245200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr1:94241000-94245400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:94241000-94245400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:94241000-94247400	Enhancers	HMEC	breast
41	chr1:94241000-94249000	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links