Variant report

Variant	rs6691033
Chromosome Location	chr1:67007429-67007430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10889624	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10889625	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11208903	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143964	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1338184	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1338194	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1338200	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1415974	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1415984	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1547737	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1856315	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1947083	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121051	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2859914	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4142763	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4655494	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588203	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6588204	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7354930	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7354983	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7355221	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7540195	0.80[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7543607	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs967322	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs967325	0.95[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs984409	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs994396	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67008000	Weak transcription	Lung	lung
2	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:67001000-67008000	Weak transcription	Left Ventricle	heart
5	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
6	chr1:67001600-67011000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:67002000-67010600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:67002800-67008200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
10	chr1:67003800-67008000	Enhancers	Brain Anterior Caudate	brain
11	chr1:67004200-67009200	Enhancers	Brain Cingulate Gyrus	brain
12	chr1:67004200-67009600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
14	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
15	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
16	chr1:67005000-67008600	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:67005400-67012200	Enhancers	Brain Angular Gyrus	brain
18	chr1:67005600-67008000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:67005600-67008000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:67005600-67008400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:67005600-67008800	Weak transcription	HMEC	breast
22	chr1:67005800-67010600	Weak transcription	Fetal Brain Female	brain
23	chr1:67006000-67011000	Enhancers	HUVEC	blood vessel
24	chr1:67006400-67007600	Enhancers	NHLF	lung
25	chr1:67006400-67011200	Weak transcription	Fetal Brain Male	brain
26	chr1:67006600-67008000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:67006600-67008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:67006600-67008800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:67006800-67008000	Weak transcription	Fetal Lung	lung
30	chr1:67006800-67012000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:67007000-67008000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:67007000-67008000	Weak transcription	HepG2	liver
33	chr1:67007000-67008200	Weak transcription	Hela-S3	cervix
34	chr1:67007000-67008400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:67007000-67008800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:67007000-67008800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:67007000-67011400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr1:67007200-67008000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:67007200-67008000	Weak transcription	NH-A	brain
41	chr1:67007200-67008200	Enhancers	Muscle Satellite Cultured Cells	--
42	chr1:67007200-67008400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:67007200-67008600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:67007200-67009200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr1:67007200-67010600	Weak transcription	Aorta	Aorta
46	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:67007400-67007800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:67007400-67007800	Weak transcription	Osteobl	bone

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