Variant report

Variant	rs6691868
Chromosome Location	chr1:160864434-160864435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr1:160864308-160864573	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000213080	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10797087	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10908808	0.81[EUR][1000 genomes]
rs10908809	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10908810	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10908811	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10908812	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10908813	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11265510	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11265514	0.93[EUR][1000 genomes]
rs11265516	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11265519	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11587040	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12080285	0.82[EUR][1000 genomes]
rs12125065	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12135639	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12740520	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17387157	0.81[EUR][1000 genomes]
rs1810924	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1855186	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1855187	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1930596	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1930598	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2039415	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2184064	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2225591	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2236515	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2274905	0.81[EUR][1000 genomes]
rs2274907	0.81[EUR][1000 genomes]
rs2274909	0.81[EUR][1000 genomes]
rs2274910	0.81[EUR][1000 genomes]
rs2297559	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3766356	0.81[EUR][1000 genomes]
rs3766357	0.81[EUR][1000 genomes]
rs3766359	0.81[EUR][1000 genomes]
rs3818724	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3820094	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3953093	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3953095	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4129196	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4656277	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4656282	0.82[EUR][1000 genomes]
rs4656955	0.81[EUR][1000 genomes]
rs4656956	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4656957	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4656958	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4656959	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4656964	0.84[EUR][1000 genomes]
rs6427550	0.81[EUR][1000 genomes]
rs6427551	0.81[EUR][1000 genomes]
rs6427552	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6427553	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6658416	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6671490	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6694415	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6704490	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7411035	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7414826	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7524351	0.81[EUR][1000 genomes]
rs7532133	0.81[EUR][1000 genomes]
rs7551697	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6691868	RP11-312J18.6	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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