Variant report

Variant	rs6692361
Chromosome Location	chr1:210669837-210669838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12034655	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12037995	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12042142	0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs12569120	0.81[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4845036	0.95[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs6675248	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs6697873	0.87[ASN][1000 genomes]
rs7354945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7513126	0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210643200-210674000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210653800-210678800	Weak transcription	HSMM	muscle
3	chr1:210663600-210672400	Weak transcription	HSMMtube	muscle
4	chr1:210667600-210672400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210668000-210674000	Weak transcription	Aorta	Aorta
6	chr1:210669000-210670000	Enhancers	NH-A	brain
7	chr1:210669000-210670200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:210669000-210670200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:210669000-210670400	Enhancers	Osteobl	bone
10	chr1:210669400-210670400	Enhancers	Brain Hippocampus Middle	brain
11	chr1:210669600-210670000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:210669600-210670000	Enhancers	Brain Angular Gyrus	brain
13	chr1:210669600-210670000	Enhancers	Brain Substantia Nigra	brain
14	chr1:210669600-210670200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:210669600-210670200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:210669600-210670200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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