Variant report

Variant	rs6693485
Chromosome Location	chr1:155962347-155962348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2152051	0.89[AMR][1000 genomes]
rs6687169	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155954600-155970800	Weak transcription	NHEK	skin
2	chr1:155959200-155966000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:155959200-155978200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:155959400-155965000	Weak transcription	Pancreas	Pancrea
5	chr1:155959400-155965800	Weak transcription	HSMMtube	muscle
6	chr1:155959400-155970800	Weak transcription	Colonic Mucosa	Colon
7	chr1:155959400-155976600	Weak transcription	Aorta	Aorta
8	chr1:155959600-155964400	Weak transcription	Fetal Intestine Large	intestine
9	chr1:155959600-155964400	Weak transcription	Fetal Intestine Small	intestine
10	chr1:155959600-155965400	Weak transcription	Right Atrium	heart
11	chr1:155959600-155970400	Weak transcription	Stomach Mucosa	stomach
12	chr1:155959600-155971000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr1:155959600-155971800	Weak transcription	Gastric	stomach
14	chr1:155959800-155962400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr1:155959800-155970400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:155959800-155970600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:155959800-155974600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:155960800-155962400	Weak transcription	Spleen	Spleen
19	chr1:155960800-155965400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:155961000-155966000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:155961200-155965800	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:155961200-155965800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr1:155961200-155966000	Weak transcription	K562	blood
24	chr1:155961200-155974600	Weak transcription	Lung	lung
25	chr1:155961400-155965600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:155961400-155966000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:155961600-155962400	Enhancers	HepG2	liver
28	chr1:155961600-155962400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr1:155961600-155969600	Weak transcription	Hela-S3	cervix
30	chr1:155961800-155964400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:155962000-155965600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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