Variant report

Variant	rs6694188
Chromosome Location	chr1:220624026-220624027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12046244	0.95[JPT][hapmap];0.91[TSI][hapmap]
rs1338765	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1933881	0.82[YRI][hapmap]
rs1953809	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3753873	0.87[JPT][hapmap]
rs3753874	0.87[JPT][hapmap]
rs4120669	0.95[JPT][hapmap]
rs4846647	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6541154	0.81[JPT][hapmap]
rs7555225	0.95[JPT][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220620400-220624400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:220620600-220626800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:220621200-220624600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:220622200-220624600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:220622200-220624800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:220623000-220624200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:220624000-220624400	Enhancers	Colonic Mucosa	Colon
8	chr1:220624000-220624800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:220624000-220625400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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