Variant report

Variant	rs6694217
Chromosome Location	chr1:215355138-215355139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10864155	1.00[YRI][hapmap]
rs12118508	1.00[YRI][hapmap]
rs12127285	1.00[YRI][hapmap]
rs12138874	1.00[YRI][hapmap]
rs6703032	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215353400-215355200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:215353800-215355400	Weak transcription	Fetal Brain Female	brain
3	chr1:215354800-215356000	ZNF genes & repeats	NHDF-Ad	bronchial
4	chr1:215355000-215355200	ZNF genes & repeats	Brain Germinal Matrix	brain
5	chr1:215355000-215356000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:215355000-215356000	ZNF genes & repeats	NHLF	lung
7	chr1:215355000-215356000	ZNF genes & repeats	Osteobl	bone
8	chr1:215355000-215356200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:215355000-215356400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:215355000-215356400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:215355000-215356400	ZNF genes & repeats	Gastric	stomach
12	chr1:215355000-215356600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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