Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:225864764..225867130-chr1:225867522..225869870,2	K562	blood:
2	chr1:225868181..225870130-chr1:225876485..225878470,2	MCF-7	breast:
3	chr1:225866335..225868631-chr1:225888008..225889564,2	K562	blood:
4	chr1:225859471..225862054-chr1:225866806..225869367,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227496	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10915857	0.91[AFR][1000 genomes]
rs10915872	0.83[TSI][hapmap]
rs12022037	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12023665	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12024341	0.93[EUR][1000 genomes]
rs12025069	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025267	0.84[CEU][hapmap]
rs12036321	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12047500	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857008	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2615061	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4653651	0.93[YRI][hapmap]
rs61850616	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61850655	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61850657	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6426082	0.84[AFR][1000 genomes]
rs6694288	0.82[YRI][hapmap]
rs7365361	0.86[AFR][1000 genomes]
rs7365591	0.86[AFR][1000 genomes]
rs7519220	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7552440	0.93[YRI][hapmap]
rs7553931	0.82[AFR][1000 genomes]
rs943759	0.88[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225863800-225868600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:225865400-225872600	Weak transcription	Aorta	Aorta
3	chr1:225865400-225878600	Weak transcription	Right Atrium	heart
4	chr1:225865600-225888000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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