Variant report

Variant	rs6695032
Chromosome Location	chr1:215694258-215694259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs58411583	0.89[AFR][1000 genomes]
rs59214288	0.87[AFR][1000 genomes]
rs59654382	0.87[AFR][1000 genomes]
rs59962254	0.87[AFR][1000 genomes]
rs6672523	0.87[AFR][1000 genomes]
rs6684030	1.00[YRI][hapmap]
rs73083424	0.87[AFR][1000 genomes]
rs73083434	0.87[AFR][1000 genomes]
rs73083440	1.00[AFR][1000 genomes]
rs73083442	1.00[AFR][1000 genomes]
rs73083444	1.00[AFR][1000 genomes]
rs73083450	0.87[AFR][1000 genomes]
rs73083453	0.87[AFR][1000 genomes]
rs73083460	0.87[AFR][1000 genomes]
rs73083463	1.00[AFR][1000 genomes]
rs73083467	0.87[AFR][1000 genomes]
rs73083482	1.00[AFR][1000 genomes]
rs73083485	1.00[AFR][1000 genomes]
rs73083488	1.00[AFR][1000 genomes]
rs73083493	0.89[AFR][1000 genomes]
rs73083496	0.89[AFR][1000 genomes]
rs73083498	0.89[AFR][1000 genomes]
rs73083500	0.89[AFR][1000 genomes]
rs73085420	0.87[AFR][1000 genomes]
rs73085444	0.87[AFR][1000 genomes]
rs73085451	0.87[AFR][1000 genomes]
rs73085460	0.87[AFR][1000 genomes]
rs73087422	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv945289	chr1:215680875-215699974	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215691400-215696600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:215691600-215696400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:215691600-215696400	Weak transcription	Osteobl	bone
4	chr1:215691600-215696600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215691800-215697000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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