Variant report

Variant	rs66950491
Chromosome Location	chr18:24384147-24384148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24384107..24384977-chr18:24392742..24393726,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1058427	1.00[ASN][1000 genomes]
rs11659207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11661147	1.00[ASN][1000 genomes]
rs11661256	1.00[ASN][1000 genomes]
rs11662880	1.00[ASN][1000 genomes]
rs11665087	1.00[ASN][1000 genomes]
rs12954845	1.00[AFR][1000 genomes]
rs12963250	1.00[ASN][1000 genomes]
rs12965167	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12968026	1.00[ASN][1000 genomes]
rs12970160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595254	1.00[ASN][1000 genomes]
rs16942763	1.00[ASN][1000 genomes]
rs16942806	1.00[ASN][1000 genomes]
rs16942835	1.00[ASN][1000 genomes]
rs16958776	1.00[ASN][1000 genomes]
rs17611328	0.80[AMR][1000 genomes]
rs17614110	1.00[ASN][1000 genomes]
rs17684326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1839319	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34047317	1.00[AFR][1000 genomes]
rs34315959	1.00[AFR][1000 genomes]
rs34775621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34909051	1.00[AFR][1000 genomes]
rs35531875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35601155	1.00[AFR][1000 genomes]
rs548220	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66522730	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs66985226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67207056	1.00[ASN][1000 genomes]
rs67384004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67461489	1.00[ASN][1000 genomes]
rs67918306	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs68036122	1.00[ASN][1000 genomes]
rs71352701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71353404	1.00[ASN][1000 genomes]
rs72878776	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24381600-24385000	Enhancers	Dnd41	blood
2	chr18:24382400-24385600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:24382800-24385800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:24382800-24385800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:24382800-24386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:24383600-24384600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr18:24383800-24384200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:24383800-24384600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr18:24383800-24384800	Enhancers	A549	lung
10	chr18:24383800-24385000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr18:24384000-24384800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr18:24384000-24385000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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