Variant report

Variant	rs6695583
Chromosome Location	chr1:220833990-220833991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10495149	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10746403	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10779412	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10779413	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10779414	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10863561	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118567	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.89[LWK][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap]
rs11118570	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs11118573	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.82[LWK][hapmap];0.97[TSI][hapmap]
rs11118576	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118579	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118584	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11118588	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11588721	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs1193032	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12044432	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12126252	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12408540	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs12735691	0.80[ASN][1000 genomes]
rs2152836	0.94[ASW][hapmap];0.80[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2244448	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs2378400	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2589586	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[TSI][hapmap]
rs2589589	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[TSI][hapmap]
rs2786606	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[TSI][hapmap];0.86[ASN][1000 genomes]
rs2786610	0.84[CEU][hapmap];0.95[CHB][hapmap]
rs2786617	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[TSI][hapmap]
rs2889895	0.88[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.81[MKK][hapmap];0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3753873	0.87[CHB][hapmap]
rs3753874	0.87[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.86[LWK][hapmap]
rs3767319	0.89[ASW][hapmap];0.80[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap]
rs3767320	0.89[ASW][hapmap];0.90[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3767321	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3767323	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3820347	0.95[CHB][hapmap];0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3899315	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3905814	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4120669	0.81[CHB][hapmap]
rs4338357	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4846326	0.94[ASW][hapmap];0.90[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.80[LWK][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap]
rs4846327	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4846655	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6541154	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs6675368	0.90[CEU][hapmap];0.95[CHB][hapmap]
rs9430949	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220778800-220837200	Weak transcription	NHEK	skin
2	chr1:220784200-220836600	Weak transcription	Fetal Lung	lung
3	chr1:220791200-220841200	Weak transcription	HMEC	breast
4	chr1:220792000-220834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:220798000-220836400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:220800000-220837800	Weak transcription	Esophagus	oesophagus
7	chr1:220807800-220836400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:220813600-220836000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:220815800-220837200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:220816200-220836200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:220816600-220834200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:220816600-220836000	Weak transcription	Fetal Kidney	kidney
13	chr1:220820400-220836600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr1:220821600-220834600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:220822000-220836800	Weak transcription	Pancreas	Pancrea
16	chr1:220823200-220835800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:220823400-220835600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:220825600-220836200	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:220827600-220837200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:220827600-220839600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:220827800-220835000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:220827800-220835200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:220828200-220837000	Weak transcription	Brain Germinal Matrix	brain
24	chr1:220828600-220835000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr1:220828800-220835000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr1:220828800-220839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:220829200-220835200	Weak transcription	Left Ventricle	heart
28	chr1:220829400-220834400	Weak transcription	Aorta	Aorta
29	chr1:220829400-220835000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr1:220829400-220836800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:220829400-220837200	Weak transcription	Brain Angular Gyrus	brain
32	chr1:220829400-220837200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:220829400-220839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:220829400-220847200	Weak transcription	Right Ventricle	heart
35	chr1:220829600-220835000	Weak transcription	Fetal Stomach	stomach
36	chr1:220829600-220838000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr1:220829600-220845800	Weak transcription	Fetal Heart	heart
38	chr1:220829800-220836800	Weak transcription	Brain Anterior Caudate	brain
39	chr1:220830000-220837200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:220830600-220834400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:220830600-220835200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr1:220830600-220840200	Weak transcription	Fetal Brain Male	brain
43	chr1:220831200-220837000	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:220831400-220845800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr1:220831600-220835600	Strong transcription	Fetal Brain Female	brain
46	chr1:220832000-220834400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:220832400-220837200	Weak transcription	Fetal Muscle Leg	muscle
48	chr1:220832600-220834400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:220832600-220835400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr1:220832600-220836800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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