Variant report

Variant	rs6698113
Chromosome Location	chr1:211505602-211505603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211504123..211506416-chr1:211604400..211606288,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10458470	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10494935	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10863885	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs11119717	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs11119720	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs11119725	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs11119727	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119731	0.82[ASN][1000 genomes]
rs11119733	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11119734	0.81[ASN][1000 genomes]
rs11119737	0.82[ASN][1000 genomes]
rs11119738	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs11119740	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs11577764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027277	0.82[ASN][1000 genomes]
rs12030854	0.82[ASN][1000 genomes]
rs12033418	0.95[ASN][1000 genomes]
rs12035966	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12039683	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs12039915	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs12085730	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs12097572	0.84[ASN][1000 genomes]
rs17017360	1.00[CEU][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs17017401	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs1983259	0.86[MKK][hapmap]
rs2175633	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289758	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2920907	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3738201	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs3738202	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap]
rs3855878	0.86[MKK][hapmap]
rs4443952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951521	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4951735	0.86[MKK][hapmap]
rs4951743	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57093875	0.88[ASN][1000 genomes]
rs58510761	0.83[ASN][1000 genomes]
rs60169087	0.97[ASN][1000 genomes]
rs61624054	0.82[ASN][1000 genomes]
rs6540676	0.86[MKK][hapmap]
rs6540679	1.00[ASW][hapmap];0.85[CHD][hapmap]
rs6661043	0.86[MKK][hapmap]
rs6663627	0.86[MKK][hapmap]
rs6663729	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6671526	0.92[ASW][hapmap];0.86[MKK][hapmap]
rs6681141	0.80[ASN][1000 genomes]
rs6684356	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6698191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7540368	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs784367	0.83[YRI][hapmap]
rs784377	0.85[MKK][hapmap]
rs9887769	0.81[EUR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211501200-211509200	Weak transcription	Fetal Kidney	kidney
2	chr1:211501200-211511000	Enhancers	Stomach Mucosa	stomach
3	chr1:211501200-211515200	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr1:211501400-211505800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:211501400-211506200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:211501600-211506600	Enhancers	Colon Smooth Muscle	Colon
7	chr1:211502400-211505800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:211502400-211519000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:211502600-211519000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:211502800-211506200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:211502800-211506400	Enhancers	NHDF-Ad	bronchial
12	chr1:211503200-211506000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:211503200-211506600	Enhancers	Spleen	Spleen
14	chr1:211503200-211507000	Weak transcription	Fetal Intestine Large	intestine
15	chr1:211503200-211507000	Enhancers	Small Intestine	intestine
16	chr1:211503400-211506000	Enhancers	Stomach Smooth Muscle	stomach
17	chr1:211503400-211506200	Enhancers	Rectal Smooth Muscle	rectum
18	chr1:211503400-211506600	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr1:211503400-211507000	Enhancers	Pancreas	Pancrea
20	chr1:211503400-211508200	Weak transcription	NH-A	brain
21	chr1:211503400-211509200	Weak transcription	Hela-S3	cervix
22	chr1:211503600-211506200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:211503600-211506400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr1:211503600-211506600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr1:211503600-211508400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr1:211503600-211508600	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr1:211503600-211508800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr1:211503600-211509000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr1:211503800-211506000	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:211503800-211506600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:211503800-211506800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr1:211503800-211508800	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr1:211504000-211508800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr1:211504000-211508800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr1:211504200-211505800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:211504200-211505800	Enhancers	Fetal Thymus	thymus
37	chr1:211504200-211505800	Enhancers	HMEC	breast
38	chr1:211504200-211506600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr1:211504200-211507200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:211504200-211508200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr1:211504200-211508800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr1:211504200-211509000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr1:211504200-211511000	Weak transcription	Placenta	Placenta
44	chr1:211504400-211506000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:211504400-211506200	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr1:211504400-211506200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:211504400-211506200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:211504400-211508400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr1:211504600-211506000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr1:211504600-211508400	Enhancers	Primary B cells from cord blood	blood

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