Variant report

Variant	rs66984720
Chromosome Location	chr6:64275598-64275599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64271553..64273929-chr6:64274196..64276056,2	MCF-7	breast:
2	chr6:64271187..64280436-chr6:64280675..64285943,14	K562	blood:
3	chr6:64256356..64258485-chr6:64274264..64276297,2	K562	blood:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1062193	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755111	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756680	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11757655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759362	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1197892	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1210839	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681953	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1681967	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894454	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16894460	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894480	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16894493	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1744156	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744163	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872288	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1905595	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1923521	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1923522	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2075656	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622310	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2622313	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396397	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28635226	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2881842	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35468218	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35811627	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857527	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4710434	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56950873	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56977573	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57258726	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57519486	0.96[ASN][1000 genomes]
rs57899418	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58016244	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58173616	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58374599	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58779953	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59458355	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59589817	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60727297	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60863270	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61382532	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61426335	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61580957	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6454298	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66500769	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs66508463	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66514362	0.83[EUR][1000 genomes]
rs66559225	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66618112	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66648865	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66683185	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66769846	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66924207	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66943356	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67048845	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67118169	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67125777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67260200	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67549604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67640372	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67805256	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67879075	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67885904	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929720	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880852	0.82[ASN][1000 genomes]
rs72880876	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72880879	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72880884	0.96[ASN][1000 genomes]
rs72882716	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72882748	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72882751	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746492	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7766283	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766347	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767556	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9449520	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64271400-64275800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:64271600-64275600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:64273400-64276800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:64273800-64275800	Active TSS	Liver	Liver
5	chr6:64274400-64276200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:64274400-64276800	Flanking Active TSS	Hela-S3	cervix
7	chr6:64274400-64279000	Enhancers	Stomach Mucosa	stomach
8	chr6:64274600-64276600	Enhancers	Fetal Intestine Large	intestine
9	chr6:64274600-64276600	Flanking Active TSS	A549	lung
10	chr6:64274800-64275800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:64274800-64276000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:64274800-64276400	Enhancers	Fetal Intestine Small	intestine
13	chr6:64275000-64275600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:64275000-64275800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:64275000-64276000	Weak transcription	Pancreas	Pancrea
16	chr6:64275000-64276200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:64275000-64276200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:64275000-64276600	Enhancers	NHEK	skin
19	chr6:64275200-64275600	Active TSS	HepG2	liver
20	chr6:64275200-64276000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:64275200-64276800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:64275400-64276000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:64275400-64276400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:64275400-64276600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links