Variant report

Variant	rs6699189
Chromosome Location	chr1:220828680-220828681
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1073460	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10863561	0.81[AMR][1000 genomes]
rs12048541	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs17007885	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1933002	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs1933008	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2253641	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2378401	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2378402	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2589588	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2786601	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2786604	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2786607	0.94[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2786613	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes]
rs2786619	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2993209	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2994527	0.85[AMR][1000 genomes]
rs3737296	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3806329	0.83[CHB][hapmap]
rs4011894	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4846657	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6541155	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6677302	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6699196	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7514431	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9431262	0.82[AFR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220778800-220837200	Weak transcription	NHEK	skin
2	chr1:220784200-220836600	Weak transcription	Fetal Lung	lung
3	chr1:220791200-220841200	Weak transcription	HMEC	breast
4	chr1:220792000-220834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:220798000-220836400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:220800000-220837800	Weak transcription	Esophagus	oesophagus
7	chr1:220807400-220829800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:220807800-220828800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:220807800-220836400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:220813600-220836000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:220815800-220837200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:220816200-220836200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:220816600-220834200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:220816600-220836000	Weak transcription	Fetal Kidney	kidney
15	chr1:220819800-220828800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:220820400-220836600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:220821600-220834600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr1:220822000-220836800	Weak transcription	Pancreas	Pancrea
19	chr1:220823200-220828800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:220823200-220829800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:220823200-220835800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:220823400-220829600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:220823400-220830400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:220823400-220830600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:220823400-220835600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:220823800-220831000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:220824800-220829800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:220825400-220830600	Strong transcription	Adipose Nuclei	Adipose
29	chr1:220825600-220836200	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:220826200-220830600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:220826400-220829200	Strong transcription	Left Ventricle	heart
32	chr1:220826400-220829400	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:220826400-220829600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr1:220826400-220829600	Strong transcription	Fetal Muscle Leg	muscle
35	chr1:220826600-220828800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:220826600-220828800	Weak transcription	Brain Angular Gyrus	brain
37	chr1:220826600-220829600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr1:220827000-220829400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:220827000-220829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:220827000-220829400	Strong transcription	Aorta	Aorta
41	chr1:220827000-220829400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr1:220827000-220829800	Strong transcription	Brain Anterior Caudate	brain
43	chr1:220827000-220831400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:220827200-220829600	Enhancers	Fetal Heart	heart
45	chr1:220827200-220829800	Genic enhancers	Fetal Brain Female	brain
46	chr1:220827600-220837200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:220827600-220839600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr1:220827800-220835000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:220827800-220835200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr1:220828000-220831400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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