Variant report

Variant	rs669937
Chromosome Location	chr11:93550452-93550453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93549611..93555766-chr11:93556424..93562226,8	K562	blood:
2	chr11:93544820..93547315-chr11:93548185..93551006,2	K562	blood:
3	chr11:93461936..93464085-chr11:93550209..93551973,2	K562	blood:

Variant related genes	Relation type
ENSG00000207112	Chromatin interaction
ENSG00000206911	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10741468	1.00[EUR][1000 genomes]
rs10765632	1.00[EUR][1000 genomes]
rs10831087	1.00[EUR][1000 genomes]
rs1939566	1.00[EUR][1000 genomes]
rs2434983	1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs4595504	1.00[EUR][1000 genomes]
rs584474	1.00[EUR][1000 genomes]
rs592526	0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs604414	1.00[EUR][1000 genomes]
rs607826	1.00[EUR][1000 genomes]
rs614003	1.00[EUR][1000 genomes]
rs622231	1.00[EUR][1000 genomes]
rs624883	1.00[EUR][1000 genomes]
rs641449	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6483257	1.00[EUR][1000 genomes]
rs6483263	1.00[EUR][1000 genomes]
rs653934	1.00[EUR][1000 genomes]
rs655208	1.00[EUR][1000 genomes]
rs657177	0.96[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs666470	1.00[EUR][1000 genomes]
rs683660	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs694307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123801	1.00[EUR][1000 genomes]
rs73561150	1.00[EUR][1000 genomes]
rs73561172	1.00[EUR][1000 genomes]
rs73563050	1.00[EUR][1000 genomes]
rs73564781	1.00[EUR][1000 genomes]
rs73564788	1.00[EUR][1000 genomes]
rs73566804	1.00[EUR][1000 genomes]
rs73566811	1.00[EUR][1000 genomes]
rs73566818	1.00[EUR][1000 genomes]
rs73566826	1.00[EUR][1000 genomes]
rs7928328	1.00[EUR][1000 genomes]
rs7939434	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93520200-93551000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:93520600-93551000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:93521000-93550800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:93521400-93551200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:93521800-93551000	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr11:93533000-93555600	Weak transcription	Small Intestine	intestine
7	chr11:93534600-93550800	Strong transcription	Primary hematopoietic stem cells	blood
8	chr11:93538800-93551000	Strong transcription	Fetal Muscle Trunk	muscle
9	chr11:93543000-93551800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:93543000-93552200	Weak transcription	Esophagus	oesophagus
11	chr11:93543000-93553200	Weak transcription	Aorta	Aorta
12	chr11:93543000-93554400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:93544400-93550800	Weak transcription	Stomach Mucosa	stomach
14	chr11:93544600-93552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:93546200-93551800	Weak transcription	Gastric	stomach
16	chr11:93546200-93552200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:93546200-93553200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:93546400-93553000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:93546400-93553600	Weak transcription	HepG2	liver
20	chr11:93546400-93554200	Weak transcription	Colonic Mucosa	Colon
21	chr11:93546400-93566200	Weak transcription	Brain Angular Gyrus	brain
22	chr11:93546600-93552400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr11:93546600-93554200	Weak transcription	K562	blood
24	chr11:93547000-93550800	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:93547400-93553400	Weak transcription	Ovary	ovary
26	chr11:93547600-93551000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:93547600-93552200	Weak transcription	NHEK	skin
28	chr11:93547800-93550800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:93547800-93551000	Weak transcription	Hela-S3	cervix
30	chr11:93547800-93552800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:93547800-93553600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:93547800-93553600	Weak transcription	HSMMtube	muscle
33	chr11:93547800-93554200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:93547800-93554400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr11:93548000-93552600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:93548000-93555800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:93548200-93552000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:93548200-93552800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr11:93548200-93553600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:93548400-93551000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:93548400-93552000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:93548400-93552400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:93548400-93553600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:93548400-93554200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:93548600-93550800	Weak transcription	Dnd41	blood
46	chr11:93548600-93551000	Weak transcription	NH-A	brain
47	chr11:93548600-93552200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:93548800-93553200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:93549000-93550600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:93549000-93550600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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