The 2.0 version of rSNPBase

Variant report

Variant rs6699678
Chromosome Location chr1:172863101-172863102
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172861800-172863200 Enhancers Placenta Amnion Placenta Amnion
2 chr1:172862000-172863200 Enhancers Psoas Muscle Psoas
3 chr1:172862000-172864000 Enhancers A549 lung
4 chr1:172862000-172864200 Enhancers Skeletal Muscle Male skeletal muscle
5 chr1:172862200-172863200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:172862200-172863800 Enhancers Dnd41 blood
7 chr1:172862200-172864400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr1:172862400-172863200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:172862400-172863200 Enhancers Stomach Mucosa stomach
10 chr1:172862400-172863600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr1:172862400-172863800 Enhancers Primary T helper naive cells from peripheral blood blood
12 chr1:172862400-172863800 Enhancers Primary T helper cells PMA-I stimulated --
13 chr1:172862400-172863800 Enhancers GM12878-XiMat blood
14 chr1:172862400-172863800 Enhancers NHEK skin
15 chr1:172862600-172863200 Enhancers Muscle Satellite Cultured Cells --
16 chr1:172862600-172863600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
17 chr1:172862600-172863800 Enhancers Primary T helper cells fromperipheralblood blood
18 chr1:172862600-172863800 Weak transcription Adipose Nuclei Adipose
19 chr1:172862600-172865200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:172862800-172863400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:172862800-172863600 Weak transcription NHLF lung
22 chr1:172862800-172863800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:172862800-172863800 Weak transcription Fetal Thymus thymus
24 chr1:172862800-172864000 Weak transcription HSMM muscle
25 chr1:172862800-172864200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:172862800-172864200 Weak transcription Ovary ovary
27 chr1:172862800-172864400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr1:172862800-172864400 Weak transcription NH-A brain
29 chr1:172862800-172866800 Weak transcription HMEC breast
30 chr1:172863000-172863400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:172863000-172863600 Weak transcription Primary T cells fromperipheralblood blood
32 chr1:172863000-172863600 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr1:172863000-172864000 Weak transcription Right Atrium heart
34 chr1:172863000-172864000 Enhancers Hela-S3 cervix
35 chr1:172863000-172864200 Enhancers HUVEC blood vessel
36 chr1:172863000-172864200 Weak transcription NHDF-Ad bronchial
37 chr1:172863000-172864400 Weak transcription Osteobl bone

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Last update: Aug 31, 2015