Variant report

Variant	rs67001204
Chromosome Location	chr7:48558566-48558567
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 178 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10254742	0.81[EUR][1000 genomes]
rs10256975	0.81[EUR][1000 genomes]
rs10499682	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10499683	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12112361	0.80[ASN][1000 genomes]
rs12113920	0.80[ASN][1000 genomes]
rs12113960	0.80[ASN][1000 genomes]
rs12667982	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12669930	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12669976	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12670340	0.80[ASN][1000 genomes]
rs12671073	0.80[ASN][1000 genomes]
rs12672551	0.80[ASN][1000 genomes]
rs12674031	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1316349	0.80[ASN][1000 genomes]
rs1316821	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13237819	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1405920	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1433506	0.81[EUR][1000 genomes]
rs1527840	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1609212	0.80[ASN][1000 genomes]
rs1609213	0.80[ASN][1000 genomes]
rs1609214	0.80[ASN][1000 genomes]
rs17092931	0.80[ASN][1000 genomes]
rs17132335	0.81[EUR][1000 genomes]
rs17132373	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17132376	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17132383	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17132388	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17132402	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17132417	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17132425	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17132430	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17132439	0.80[ASN][1000 genomes]
rs17132443	0.80[ASN][1000 genomes]
rs17132460	0.80[ASN][1000 genomes]
rs17132479	0.80[ASN][1000 genomes]
rs17132491	0.80[ASN][1000 genomes]
rs1918580	0.80[ASN][1000 genomes]
rs1918581	0.80[ASN][1000 genomes]
rs1918586	0.80[ASN][1000 genomes]
rs1918587	0.80[ASN][1000 genomes]
rs1918588	0.80[ASN][1000 genomes]
rs1918589	0.80[ASN][1000 genomes]
rs1918595	0.81[ASN][1000 genomes]
rs1918596	0.80[ASN][1000 genomes]
rs1918597	0.80[ASN][1000 genomes]
rs1918598	0.80[ASN][1000 genomes]
rs1918601	0.80[ASN][1000 genomes]
rs1918602	0.80[ASN][1000 genomes]
rs1918606	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1918608	0.80[ASN][1000 genomes]
rs1918613	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2141251	0.80[ASN][1000 genomes]
rs2178086	0.80[ASN][1000 genomes]
rs2178087	0.80[ASN][1000 genomes]
rs2217710	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2222731	0.80[ASN][1000 genomes]
rs28481588	0.81[EUR][1000 genomes]
rs2885484	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34252471	0.80[ASN][1000 genomes]
rs4072501	0.80[ASN][1000 genomes]
rs4072502	0.80[ASN][1000 genomes]
rs4072503	0.80[ASN][1000 genomes]
rs41332948	0.80[ASN][1000 genomes]
rs4144063	0.80[ASN][1000 genomes]
rs4144064	0.80[ASN][1000 genomes]
rs4144067	0.80[ASN][1000 genomes]
rs4295610	0.80[ASN][1000 genomes]
rs4296993	0.80[ASN][1000 genomes]
rs4398852	0.80[ASN][1000 genomes]
rs4587280	0.80[ASN][1000 genomes]
rs55650796	0.81[EUR][1000 genomes]
rs56205257	0.80[ASN][1000 genomes]
rs56232183	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56241442	0.80[ASN][1000 genomes]
rs56247566	0.84[ASN][1000 genomes]
rs56393952	0.80[ASN][1000 genomes]
rs56798342	0.80[ASN][1000 genomes]
rs56806901	0.80[ASN][1000 genomes]
rs57401097	0.80[ASN][1000 genomes]
rs57877708	0.80[ASN][1000 genomes]
rs58054917	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58077564	0.80[ASN][1000 genomes]
rs58433353	0.80[ASN][1000 genomes]
rs58486673	0.80[ASN][1000 genomes]
rs58553345	0.81[EUR][1000 genomes]
rs58635193	0.80[ASN][1000 genomes]
rs59100514	0.80[ASN][1000 genomes]
rs59227959	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59243715	0.80[ASN][1000 genomes]
rs59549039	0.80[ASN][1000 genomes]
rs59673264	0.80[ASN][1000 genomes]
rs60184691	0.80[ASN][1000 genomes]
rs60918397	0.80[ASN][1000 genomes]
rs61171557	0.80[ASN][1000 genomes]
rs61310674	0.80[ASN][1000 genomes]
rs61562434	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61602397	0.80[ASN][1000 genomes]
rs61649354	0.80[ASN][1000 genomes]
rs6583452	0.80[ASN][1000 genomes]
rs6583456	0.83[ASN][1000 genomes]
rs66501875	0.81[EUR][1000 genomes]
rs66522605	0.80[ASN][1000 genomes]
rs66591834	0.80[ASN][1000 genomes]
rs66729625	0.80[ASN][1000 genomes]
rs66763020	0.80[ASN][1000 genomes]
rs66785002	0.80[ASN][1000 genomes]
rs66793444	0.80[ASN][1000 genomes]
rs66898358	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66909576	0.80[ASN][1000 genomes]
rs67074321	0.80[ASN][1000 genomes]
rs67081192	0.80[ASN][1000 genomes]
rs67132562	0.81[EUR][1000 genomes]
rs67163301	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67187623	0.80[ASN][1000 genomes]
rs67223065	0.81[EUR][1000 genomes]
rs67249167	0.80[ASN][1000 genomes]
rs67249859	0.80[ASN][1000 genomes]
rs67298249	0.80[ASN][1000 genomes]
rs67331245	0.80[ASN][1000 genomes]
rs67370671	0.80[ASN][1000 genomes]
rs67398358	0.80[ASN][1000 genomes]
rs67744396	0.80[ASN][1000 genomes]
rs67744565	0.80[ASN][1000 genomes]
rs67748204	0.80[ASN][1000 genomes]
rs67764854	0.80[ASN][1000 genomes]
rs67845756	0.80[ASN][1000 genomes]
rs67852079	0.80[ASN][1000 genomes]
rs67985903	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68007434	0.80[ASN][1000 genomes]
rs68029531	0.80[ASN][1000 genomes]
rs68084496	0.80[ASN][1000 genomes]
rs68110103	0.80[ASN][1000 genomes]
rs68168969	0.80[ASN][1000 genomes]
rs68179951	0.80[ASN][1000 genomes]
rs6944801	0.80[ASN][1000 genomes]
rs6955102	0.80[ASN][1000 genomes]
rs6957309	0.80[ASN][1000 genomes]
rs6963717	0.80[ASN][1000 genomes]
rs6966994	0.80[ASN][1000 genomes]
rs6968069	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6972202	0.80[ASN][1000 genomes]
rs6972440	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6973231	0.81[EUR][1000 genomes]
rs6977997	0.80[ASN][1000 genomes]
rs6980042	0.80[ASN][1000 genomes]
rs6980069	0.80[ASN][1000 genomes]
rs73094625	0.80[ASN][1000 genomes]
rs73107574	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73109344	0.80[ASN][1000 genomes]
rs73109355	0.80[ASN][1000 genomes]
rs73109364	0.80[ASN][1000 genomes]
rs73109401	0.80[ASN][1000 genomes]
rs73111405	0.80[ASN][1000 genomes]
rs7357308	0.81[EUR][1000 genomes]
rs7455877	0.80[ASN][1000 genomes]
rs7457791	0.80[ASN][1000 genomes]
rs7776966	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7781149	0.80[ASN][1000 genomes]
rs7781150	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7785069	0.80[ASN][1000 genomes]
rs7791044	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7792728	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7797852	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7804139	0.80[ASN][1000 genomes]
rs7806480	0.80[ASN][1000 genomes]
rs7807529	0.80[ASN][1000 genomes]
rs9690617	0.80[ASN][1000 genomes]
rs9691143	0.80[ASN][1000 genomes]
rs9691391	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48523800-48574000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48547600-48570600	Weak transcription	Spleen	Spleen
3	chr7:48554000-48564400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:48555400-48570800	Strong transcription	Primary neutrophils fromperipheralblood	blood

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