Variant report

Variant	rs6701166
Chromosome Location	chr1:76771114-76771115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10782610	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10782611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10873874	0.82[CHB][hapmap];0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10873875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10873876	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414480	0.82[JPT][hapmap]
rs1414483	0.82[JPT][hapmap]
rs1414484	0.82[JPT][hapmap]
rs1414485	0.82[JPT][hapmap]
rs1414487	0.82[JPT][hapmap]
rs1537784	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs1570823	0.84[ASN][1000 genomes]
rs17098538	0.81[JPT][hapmap]
rs2225784	0.82[JPT][hapmap]
rs2392035	0.92[ASN][1000 genomes]
rs2392037	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs34995712	0.84[ASN][1000 genomes]
rs36115631	0.84[ASN][1000 genomes]
rs3851267	0.80[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3903914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3904687	0.80[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3920772	0.82[JPT][hapmap]
rs4511169	0.88[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6593527	0.82[JPT][hapmap]
rs6657540	0.82[JPT][hapmap]
rs9437129	0.84[ASN][1000 genomes]
rs9437407	0.88[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6701166	FUBP1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76755800-76783000	Weak transcription	Fetal Lung	lung
2	chr1:76760400-76779200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76765200-76775400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:76768600-76775400	Weak transcription	Fetal Thymus	thymus

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