Variant report

Variant	rs6701683
Chromosome Location	chr1:93858634-93858635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10489733	1.00[ASN][1000 genomes]
rs11164911	1.00[JPT][hapmap]
rs11799543	1.00[ASN][1000 genomes]
rs11799928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11800760	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11801175	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11801563	1.00[ASN][1000 genomes]
rs11802420	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11802421	1.00[ASN][1000 genomes]
rs11802822	0.82[ASN][1000 genomes]
rs11808445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12239183	1.00[ASN][1000 genomes]
rs2815413	1.00[JPT][hapmap]
rs28829343	1.00[ASN][1000 genomes]
rs41528947	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4847409	1.00[JPT][hapmap]
rs522999	1.00[JPT][hapmap]
rs556888	1.00[JPT][hapmap]
rs55734759	1.00[ASN][1000 genomes]
rs55738503	0.82[ASN][1000 genomes]
rs55741554	0.82[ASN][1000 genomes]
rs56281837	1.00[ASN][1000 genomes]
rs56401576	1.00[ASN][1000 genomes]
rs56657492	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs571212	1.00[JPT][hapmap]
rs573056	1.00[JPT][hapmap]
rs581825	1.00[JPT][hapmap]
rs58505360	1.00[ASN][1000 genomes]
rs58807475	0.82[ASN][1000 genomes]
rs59368083	0.82[ASN][1000 genomes]
rs59609847	0.82[ASN][1000 genomes]
rs59774396	0.82[ASN][1000 genomes]
rs60079850	0.82[ASN][1000 genomes]
rs61096581	1.00[AMR][1000 genomes]
rs61252284	0.82[ASN][1000 genomes]
rs61335636	0.82[ASN][1000 genomes]
rs61671588	1.00[ASN][1000 genomes]
rs61729705	1.00[ASN][1000 genomes]
rs628714	1.00[JPT][hapmap]
rs637198	1.00[JPT][hapmap]
rs6541348	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6541360	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6541398	1.00[ASN][1000 genomes]
rs658877	1.00[JPT][hapmap]
rs6667540	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6671070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6677114	1.00[ASN][1000 genomes]
rs6679304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6679630	1.00[ASN][1000 genomes]
rs668944	1.00[JPT][hapmap]
rs6695142	1.00[ASN][1000 genomes]
rs6704067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs72957210	0.82[ASN][1000 genomes]
rs72957220	0.82[ASN][1000 genomes]
rs72957300	0.82[ASN][1000 genomes]
rs72959204	0.82[ASN][1000 genomes]
rs72959216	1.00[ASN][1000 genomes]
rs72959225	1.00[ASN][1000 genomes]
rs72959236	1.00[ASN][1000 genomes]
rs72959238	1.00[ASN][1000 genomes]
rs72959240	1.00[ASN][1000 genomes]
rs72959245	0.92[ASN][1000 genomes]
rs72959255	1.00[ASN][1000 genomes]
rs72959260	1.00[ASN][1000 genomes]
rs72959267	1.00[ASN][1000 genomes]
rs72959273	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72961310	1.00[ASN][1000 genomes]
rs72961322	1.00[ASN][1000 genomes]
rs72961328	1.00[ASN][1000 genomes]
rs74101458	0.82[ASN][1000 genomes]
rs74101470	1.00[ASN][1000 genomes]
rs7512471	1.00[ASN][1000 genomes]
rs7518171	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7518930	1.00[ASN][1000 genomes]
rs7519163	1.00[JPT][hapmap]
rs7527459	1.00[ASN][1000 genomes]
rs7529230	0.82[ASN][1000 genomes]
rs7533526	1.00[ASN][1000 genomes]
rs7537939	1.00[ASN][1000 genomes]
rs7540960	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7544352	1.00[ASN][1000 genomes]
rs7545154	0.92[ASN][1000 genomes]
rs7545358	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7548629	1.00[ASN][1000 genomes]
rs754899	1.00[ASN][1000 genomes]
rs8489	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8561	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9324347	0.82[ASN][1000 genomes]
rs9662414	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93853200-93866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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