Variant report

Variant	rs6704108
Chromosome Location	chr1:220692822-220692823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220685173..220687805-chr1:220691709..220694895,3	MCF-7	breast:
2	chr1:220684697..220687994-chr1:220690391..220694030,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC096644.1-6	chr1:220692705-220692864	NONHSAT009609

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10158764	1.00[AMR][1000 genomes]
rs10495148	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10746397	1.00[AMR][1000 genomes]
rs10863548	1.00[AMR][1000 genomes]
rs10863549	1.00[AMR][1000 genomes]
rs11118540	1.00[AMR][1000 genomes]
rs1112147	1.00[AMR][1000 genomes]
rs11799728	1.00[AMR][1000 genomes]
rs11800084	1.00[AMR][1000 genomes]
rs11800803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801239	1.00[AMR][1000 genomes]
rs11801306	1.00[AMR][1000 genomes]
rs11802247	1.00[AMR][1000 genomes]
rs11802248	1.00[AMR][1000 genomes]
rs11802827	1.00[AMR][1000 genomes]
rs11803715	1.00[AMR][1000 genomes]
rs11806648	1.00[AMR][1000 genomes]
rs11806710	1.00[AMR][1000 genomes]
rs11807413	1.00[AMR][1000 genomes]
rs11808530	1.00[AMR][1000 genomes]
rs11810690	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811042	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11811445	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11811839	1.00[AMR][1000 genomes]
rs11811872	1.00[AMR][1000 genomes]
rs12726257	0.83[YRI][hapmap]
rs1338769	1.00[AMR][1000 genomes]
rs1338772	1.00[AMR][1000 genomes]
rs1361254	1.00[AMR][1000 genomes]
rs1361255	1.00[AMR][1000 genomes]
rs1511696	1.00[AMR][1000 genomes]
rs17007924	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008033	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008084	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008159	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17008391	1.00[AMR][1000 genomes]
rs1999937	1.00[AMR][1000 genomes]
rs3849285	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3860320	1.00[AMR][1000 genomes]
rs3897868	1.00[AMR][1000 genomes]
rs3897869	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4282827	1.00[AMR][1000 genomes]
rs57176776	1.00[AMR][1000 genomes]
rs6541144	1.00[AMR][1000 genomes]
rs6660112	1.00[AMR][1000 genomes]
rs6665732	1.00[AMR][1000 genomes]
rs6670387	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6671023	1.00[AMR][1000 genomes]
rs6673589	1.00[AMR][1000 genomes]
rs6684421	1.00[AMR][1000 genomes]
rs6696558	1.00[AMR][1000 genomes]
rs74139644	1.00[AMR][1000 genomes]
rs7512854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7519187	1.00[AMR][1000 genomes]
rs7523054	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7524156	1.00[AMR][1000 genomes]
rs7527902	1.00[AMR][1000 genomes]
rs7530121	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7536389	1.00[AMR][1000 genomes]
rs7550011	1.00[AMR][1000 genomes]
rs7554825	1.00[AMR][1000 genomes]
rs767374	0.82[AFR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220691000-220695000	Weak transcription	NHEK	skin

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