Variant report

Variant	rs6704577
Chromosome Location	chr2:10856687-10856688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11683565	1.00[EUR][1000 genomes]
rs11687590	1.00[EUR][1000 genomes]
rs11895561	1.00[EUR][1000 genomes]
rs11895617	1.00[EUR][1000 genomes]
rs11903869	1.00[EUR][1000 genomes]
rs16856397	1.00[EUR][1000 genomes]
rs2029429	1.00[EUR][1000 genomes]
rs4669611	1.00[EUR][1000 genomes]
rs59455884	1.00[EUR][1000 genomes]
rs61485909	1.00[AMR][1000 genomes]
rs6732644	0.96[AFR][1000 genomes]
rs6757971	1.00[EUR][1000 genomes]
rs6757978	1.00[EUR][1000 genomes]
rs73914835	1.00[AMR][1000 genomes]
rs73917006	1.00[EUR][1000 genomes]
rs7560753	1.00[EUR][1000 genomes]
rs7601546	1.00[AMR][1000 genomes]
rs7604523	1.00[AMR][1000 genomes]
rs7604741	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	esv3422753	chr2:10856528-10856779	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10852800-10856800	Weak transcription	NHEK	skin
2	chr2:10852800-10857200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:10853000-10856800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:10853000-10856800	Weak transcription	HMEC	breast
5	chr2:10853000-10857600	Weak transcription	Placenta	Placenta
6	chr2:10855000-10858600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:10855800-10856800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:10856600-10857200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:10856600-10857600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:10856600-10857600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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