Variant report

Variant	rs670475
Chromosome Location	chr8:9822901-9822902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11778848	1.00[AMR][1000 genomes]
rs2137788	1.00[AMR][1000 genomes]
rs2175845	1.00[AMR][1000 genomes]
rs28521097	1.00[AMR][1000 genomes]
rs28706097	1.00[AMR][1000 genomes]
rs2898236	1.00[AMR][1000 genomes]
rs4840451	1.00[AMR][1000 genomes]
rs4841248	1.00[AMR][1000 genomes]
rs4841249	1.00[AMR][1000 genomes]
rs486885	1.00[AMR][1000 genomes]
rs542203	1.00[AMR][1000 genomes]
rs578685	1.00[AMR][1000 genomes]
rs589424	1.00[AMR][1000 genomes]
rs6601394	1.00[AMR][1000 genomes]
rs660923	1.00[AMR][1000 genomes]
rs6984048	1.00[AMR][1000 genomes]
rs6985570	1.00[AMR][1000 genomes]
rs7002484	1.00[AMR][1000 genomes]
rs7008206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1023834	chr8:9798072-9904788	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv869934	chr8:9806639-9940586	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1021038	chr8:9806824-9842234	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1034165	chr8:9821150-9906812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv539465	chr8:9821150-9906812	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9819800-9823000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:9820000-9823000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr8:9821600-9823600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:9821800-9823000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:9821800-9823000	Enhancers	HepG2	liver
6	chr8:9821800-9824200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:9822200-9823200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:9822400-9823000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr8:9822400-9834200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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