Variant report

Variant	rs6706565
Chromosome Location	chr2:181930412-181930413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181930332..181932158-chr2:181935827..181937862,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10171108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10171998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10187842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10930948	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10930950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11692072	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12621277	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12989967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13004683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13004750	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13019038	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13020845	0.82[JPT][hapmap]
rs13029368	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1829365	0.85[ASN][1000 genomes]
rs4346343	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4366861	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4510177	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4595925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4667005	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4667008	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4990275	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6433878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6433879	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6433883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6433892	0.85[JPT][hapmap]
rs6704750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs6710650	1.00[JPT][hapmap]
rs6731268	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6735373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743720	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6744130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6745190	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7349232	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7371639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7559803	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7569991	1.00[JPT][hapmap]
rs9808318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181902800-181934200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:181903800-181934600	Weak transcription	NH-A	brain
3	chr2:181904400-181934000	Weak transcription	NHDF-Ad	bronchial
4	chr2:181904400-181945400	Weak transcription	Left Ventricle	heart
5	chr2:181911800-181940400	Weak transcription	Primary T cells from cord blood	blood
6	chr2:181912400-181941400	Weak transcription	Esophagus	oesophagus
7	chr2:181913800-181938400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:181917200-181931000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:181917200-181934200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:181917600-181934400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:181917600-181936800	Weak transcription	NHLF	lung
12	chr2:181917600-181937600	Weak transcription	Fetal Thymus	thymus
13	chr2:181917800-181930800	Weak transcription	GM12878-XiMat	blood
14	chr2:181917800-181934200	Weak transcription	Psoas Muscle	Psoas
15	chr2:181917800-181935600	Weak transcription	Liver	Liver
16	chr2:181918000-181938200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr2:181919600-181934400	Weak transcription	HUVEC	blood vessel
18	chr2:181919800-181931000	Weak transcription	Stomach Mucosa	stomach
19	chr2:181919800-181934000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:181919800-181934400	Weak transcription	NHEK	skin
21	chr2:181920000-181934400	Weak transcription	A549	lung
22	chr2:181920200-181934200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr2:181920400-181934200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:181920800-181949800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:181921600-181931000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:181921600-181934200	Weak transcription	Fetal Muscle Leg	muscle
27	chr2:181921600-181934400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr2:181921800-181931400	Weak transcription	Fetal Kidney	kidney
29	chr2:181922000-181942400	Weak transcription	Fetal Intestine Large	intestine
30	chr2:181922200-181937000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:181922800-181938200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:181923000-181934200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:181923200-181932600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:181923400-181931600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr2:181923400-181936400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:181923600-181930800	Weak transcription	HepG2	liver
37	chr2:181923600-181935600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:181923800-181931000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr2:181924000-181937200	Weak transcription	HSMMtube	muscle
40	chr2:181925000-181934800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr2:181925400-181934800	Weak transcription	Duodenum Mucosa	Duodenum
42	chr2:181926200-181931400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr2:181926200-181939600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr2:181926800-181934400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr2:181927000-181930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr2:181927000-181931600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr2:181927000-181934400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr2:181927200-181930800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr2:181927200-181931200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:181927200-181934200	Weak transcription	Rectal Mucosa Donor 31	rectum

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