Variant report

Variant	rs6708796
Chromosome Location	chr2:56053353-56053354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56048786..56051485-chr2:56052359..56054883,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10180834	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11125603	0.82[AMR][1000 genomes]
rs11125607	0.89[ASN][1000 genomes]
rs11125608	0.86[ASN][1000 genomes]
rs12472893	0.82[AMR][1000 genomes]
rs12478566	0.93[ASN][1000 genomes]
rs1344732	0.91[ASN][1000 genomes]
rs1346781	0.95[ASN][1000 genomes]
rs1346782	0.82[AMR][1000 genomes]
rs1346783	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1346787	0.89[ASN][1000 genomes]
rs1346790	0.89[ASN][1000 genomes]
rs1367225	0.91[ASN][1000 genomes]
rs1367226	0.89[ASN][1000 genomes]
rs1367228	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1430189	0.95[ASN][1000 genomes]
rs1430190	0.91[ASN][1000 genomes]
rs1430191	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1430203	0.90[ASN][1000 genomes]
rs1897114	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1960050	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1985160	0.91[ASN][1000 genomes]
rs1985162	0.91[ASN][1000 genomes]
rs2052933	0.95[ASN][1000 genomes]
rs2115876	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791676	1.00[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4352264	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4672074	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4672075	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6545523	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6545524	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6545526	0.96[ASN][1000 genomes]
rs6545527	0.89[ASN][1000 genomes]
rs6712017	0.95[ASN][1000 genomes]
rs6714513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6733730	0.96[ASN][1000 genomes]
rs6743114	0.89[ASN][1000 genomes]
rs6749785	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6751403	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6753814	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[ASN][1000 genomes]
rs6757057	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs72618677	0.83[ASN][1000 genomes]
rs732132	0.86[ASN][1000 genomes]
rs7426380	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7572523	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574127	0.88[ASN][1000 genomes]
rs7607070	0.87[ASN][1000 genomes]
rs7609520	0.96[ASN][1000 genomes]
rs934278	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56050400-56054400	Weak transcription	A549	lung
2	chr2:56051800-56053600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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