Variant report
Variant | rs6709182 |
---|---|
Chromosome Location | chr2:148579646-148579647 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000121989 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10180655 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs11686483 | 0.90[EUR][1000 genomes] |
rs12105745 | 0.81[CEU][hapmap] |
rs1227304 | 0.85[EUR][1000 genomes] |
rs12622150 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[EUR][1000 genomes] |
rs13016400 | 0.85[CEU][hapmap] |
rs13016893 | 0.92[CEU][hapmap];0.80[EUR][1000 genomes] |
rs13399553 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs13430086 | 0.85[CEU][hapmap] |
rs1895694 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes] |
rs2042555 | 0.88[EUR][1000 genomes] |
rs2113792 | 0.92[CEU][hapmap];0.89[EUR][1000 genomes] |
rs2113794 | 0.91[EUR][1000 genomes] |
rs2194695 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |
rs2288190 | 0.93[YRI][hapmap] |
rs2603597 | 0.83[CEU][hapmap];0.83[EUR][1000 genomes] |
rs2603600 | 0.92[TSI][hapmap];0.83[EUR][1000 genomes] |
rs2627019 | 0.83[EUR][1000 genomes] |
rs2627025 | 0.83[EUR][1000 genomes] |
rs3768684 | 0.85[CEU][hapmap];0.82[GIH][hapmap] |
rs3768686 | 0.84[CEU][hapmap];0.82[GIH][hapmap] |
rs3768688 | 0.96[CEU][hapmap];0.89[EUR][1000 genomes] |
rs3820716 | 0.85[CEU][hapmap] |
rs4419186 | 0.85[CEU][hapmap] |
rs55816333 | 1.00[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs56073268 | 0.95[EUR][1000 genomes] |
rs6713811 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes] |
rs6731371 | 0.89[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes] |
rs7566230 | 0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs7582403 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
rs9287411 | 0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes] |
rs998884 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv875275 | chr2:148166428-148711242 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
2 | nsv916286 | chr2:148438001-148977722 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv529388 | chr2:148471340-148934846 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
4 | esv3392562 | chr2:148476961-148843061 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |