Variant report

Variant	rs6710541
Chromosome Location	chr2:128160896-128160897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:128145150..128147400-chr2:128159115..128162148,3	K562	blood:
2	chr2:128160244..128162105-chr2:128165459..128168318,2	K562	blood:
3	chr2:128155478..128158047-chr2:128160860..128162623,2	K562	blood:
4	chr2:128160704..128163644-chr2:128286914..128289869,2	K562	blood:
5	chr2:128143860..128148648-chr2:128154163..128162464,14	MCF-7	breast:
6	chr2:128154427..128157643-chr2:128157781..128161017,3	K562	blood:
7	chr2:128158177..128161164-chr2:128161262..128165115,3	K562	blood:
8	chr2:128143318..128152182-chr2:128154033..128162255,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236682	Chromatin interaction
ENSG00000169967	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10169028	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10178188	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10195774	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10206392	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10211382	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10221754	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10439213	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10439214	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10451530	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1128974	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1129121	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13406313	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13421256	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13424947	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13429050	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13431911	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1607437	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2271026	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3755310	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4150448	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4150487	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4150507	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4150512	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4150515	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55826634	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56276844	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57011781	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57547812	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57878090	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59283013	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59306090	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711086	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6727155	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6740067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6740368	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6743815	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6750648	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72956480	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72956485	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964335	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72964338	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964344	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964352	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964361	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7564189	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7584829	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7586961	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs878461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs908787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9808452	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:128150400-128165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:128152600-128165800	Weak transcription	Aorta	Aorta
5	chr2:128155800-128164800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:128156000-128162200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:128156000-128163800	Enhancers	A549	lung
8	chr2:128156200-128161200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:128156200-128161200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:128156200-128162800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:128156200-128163000	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:128156200-128163000	Weak transcription	Right Atrium	heart
13	chr2:128156200-128165200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:128156400-128161400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr2:128156400-128161400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr2:128156400-128164200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:128156800-128162000	Weak transcription	Lung	lung
18	chr2:128156800-128165200	Weak transcription	Pancreas	Pancrea
19	chr2:128157000-128165400	Weak transcription	Psoas Muscle	Psoas
20	chr2:128158600-128162000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr2:128158800-128162800	Weak transcription	Left Ventricle	heart
22	chr2:128158800-128163600	Enhancers	Fetal Intestine Small	intestine
23	chr2:128159000-128161400	Enhancers	Fetal Muscle Leg	muscle
24	chr2:128159000-128161600	Enhancers	Fetal Intestine Large	intestine
25	chr2:128159200-128162000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:128159200-128162200	Weak transcription	Esophagus	oesophagus
27	chr2:128159200-128162400	Weak transcription	Adipose Nuclei	Adipose
28	chr2:128159200-128164800	Weak transcription	NHDF-Ad	bronchial
29	chr2:128159200-128165000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr2:128159200-128165200	Weak transcription	Right Ventricle	heart
31	chr2:128159200-128165200	Weak transcription	NHLF	lung
32	chr2:128159400-128165000	Weak transcription	Osteobl	bone
33	chr2:128159400-128165200	Weak transcription	HSMM	muscle
34	chr2:128159600-128161400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:128159600-128162200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr2:128159600-128164000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:128159600-128164800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr2:128159800-128162000	Weak transcription	Fetal Thymus	thymus
39	chr2:128159800-128162200	Weak transcription	Small Intestine	intestine
40	chr2:128159800-128162400	Weak transcription	K562	blood
41	chr2:128159800-128164600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr2:128159800-128165000	Weak transcription	NH-A	brain
43	chr2:128159800-128165200	Weak transcription	Placenta	Placenta
44	chr2:128160000-128161000	Enhancers	Duodenum Mucosa	Duodenum
45	chr2:128160000-128161000	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr2:128160000-128161200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr2:128160000-128162000	Weak transcription	GM12878-XiMat	blood
48	chr2:128160000-128162200	Weak transcription	HUVEC	blood vessel
49	chr2:128160000-128162600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr2:128160200-128161200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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