Variant report

Variant	rs671138
Chromosome Location	chr18:29867832-29867833
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29867305..29869453-chr18:30048858..30050694,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17719020	1.00[MEX][hapmap]
rs9959396	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29839800-29871800	Weak transcription	HSMMtube	muscle
2	chr18:29850000-29877600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:29858600-29877600	Weak transcription	Fetal Kidney	kidney
4	chr18:29859000-29870400	Weak transcription	HepG2	liver
5	chr18:29861000-29871000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr18:29861000-29876000	Weak transcription	Small Intestine	intestine
7	chr18:29861600-29869400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:29861600-29869800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr18:29861600-29876800	Weak transcription	Stomach Mucosa	stomach
10	chr18:29862400-29872400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr18:29863000-29869200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr18:29863200-29873000	Weak transcription	Right Ventricle	heart
13	chr18:29863200-29877000	Weak transcription	Fetal Heart	heart
14	chr18:29864000-29868200	Weak transcription	Psoas Muscle	Psoas
15	chr18:29864400-29869400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr18:29864400-29869800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr18:29864400-29870400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr18:29864400-29880800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr18:29864600-29881200	Weak transcription	Colon Smooth Muscle	Colon
20	chr18:29865000-29868000	Strong transcription	Fetal Intestine Small	intestine
21	chr18:29865000-29868000	Strong transcription	Fetal Stomach	stomach
22	chr18:29865000-29868000	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr18:29865200-29868000	Strong transcription	Liver	Liver
24	chr18:29865200-29868000	Strong transcription	Brain Hippocampus Middle	brain
25	chr18:29865200-29868200	Strong transcription	Stomach Smooth Muscle	stomach
26	chr18:29865400-29868000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr18:29865400-29868600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr18:29865600-29873200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr18:29865800-29868200	Strong transcription	Fetal Intestine Large	intestine
30	chr18:29865800-29868200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr18:29866200-29868000	Strong transcription	Ovary	ovary
32	chr18:29866200-29869200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr18:29866400-29868200	Strong transcription	Fetal Muscle Leg	muscle
34	chr18:29866600-29868000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr18:29866600-29868000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr18:29866600-29868000	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr18:29866600-29868000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr18:29866600-29868000	Strong transcription	Fetal Brain Female	brain
39	chr18:29866600-29868200	Strong transcription	Brain Cingulate Gyrus	brain
40	chr18:29866800-29868000	Strong transcription	Adipose Nuclei	Adipose
41	chr18:29866800-29868000	Strong transcription	Brain Substantia Nigra	brain
42	chr18:29866800-29868000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr18:29866800-29868200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr18:29867000-29868000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr18:29867000-29868000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr18:29867000-29868000	Strong transcription	Brain Angular Gyrus	brain
47	chr18:29867000-29868000	Strong transcription	Esophagus	oesophagus
48	chr18:29867000-29868000	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr18:29867000-29868000	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr18:29867000-29868200	Strong transcription	Brain Anterior Caudate	brain

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