Variant report

Variant	rs6713415
Chromosome Location	chr2:11645214-11645215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6432209	0.81[AFR][1000 genomes]
rs6756327	0.87[AFR][1000 genomes]
rs875231	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11636400-11646400	Weak transcription	Right Atrium	heart
2	chr2:11638800-11646200	Weak transcription	Psoas Muscle	Psoas
3	chr2:11639600-11645400	Weak transcription	Pancreas	Pancrea
4	chr2:11639600-11646000	Weak transcription	Hela-S3	cervix
5	chr2:11639600-11646400	Weak transcription	Right Ventricle	heart
6	chr2:11639600-11647600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:11639600-11648200	Weak transcription	Stomach Mucosa	stomach
8	chr2:11639600-11655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:11639800-11646200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:11640000-11646200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:11640000-11648000	Weak transcription	Fetal Heart	heart
12	chr2:11641400-11645800	Enhancers	HepG2	liver
13	chr2:11641400-11647800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:11641400-11651600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:11641400-11653200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:11641600-11653800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:11641800-11647800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:11643400-11651200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:11643800-11646200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr2:11643800-11646400	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:11643800-11648200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:11644000-11651800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr2:11644200-11646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:11644800-11647000	Enhancers	GM12878-XiMat	blood
25	chr2:11644800-11648400	Enhancers	Ovary	ovary
26	chr2:11645000-11646200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:11645200-11651800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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