Variant report
| Variant | rs6713732 |
|---|---|
| Chromosome Location | chr2:21129226-21129227 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10188503 | 1.00[ASN][1000 genomes] |
| rs11673955 | 1.00[ASN][1000 genomes] |
| rs11673961 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11692595 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11902301 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12710746 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12992919 | 1.00[ASN][1000 genomes] |
| rs12995733 | 1.00[ASN][1000 genomes] |
| rs12998321 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12999597 | 1.00[ASN][1000 genomes] |
| rs13009577 | 1.00[ASN][1000 genomes] |
| rs13010638 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13018819 | 1.00[ASN][1000 genomes] |
| rs13410454 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28545158 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34504815 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34645675 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35088798 | 1.00[ASN][1000 genomes] |
| rs36143367 | 1.00[ASN][1000 genomes] |
| rs3923672 | 1.00[ASN][1000 genomes] |
| rs4362515 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6715637 | 1.00[ASN][1000 genomes] |
| rs6731768 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6741714 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv455841 | chr2:21086693-21135577 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv581168 | chr2:21086693-21135577 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv455852 | chr2:21125742-21143329 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv581169 | chr2:21125742-21143329 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21128600-21129600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr2:21128800-21129800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
