Variant report

Variant	rs6715817
Chromosome Location	chr2:37763023-37763024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37762322..37765229-chr2:37766980..37769803,2	MCF-7	breast:
2	chr2:37748769..37750538-chr2:37760905..37763616,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10084269	0.82[ASN][1000 genomes]
rs10165975	0.82[ASN][1000 genomes]
rs10180573	0.81[ASN][1000 genomes]
rs12472489	0.81[ASN][1000 genomes]
rs13407307	0.81[ASN][1000 genomes]
rs4274577	0.80[ASN][1000 genomes]
rs4387769	0.81[ASN][1000 genomes]
rs4430920	0.82[ASN][1000 genomes]
rs4461243	0.82[ASN][1000 genomes]
rs4538180	0.82[ASN][1000 genomes]
rs4670726	0.81[ASN][1000 genomes]
rs4670727	0.82[ASN][1000 genomes]
rs62135619	0.81[ASN][1000 genomes]
rs62135620	0.81[ASN][1000 genomes]
rs6544090	0.81[ASN][1000 genomes]
rs6759677	0.85[ASN][1000 genomes]
rs7589042	0.82[ASN][1000 genomes]
rs7593076	0.81[ASN][1000 genomes]
rs9309009	0.81[ASN][1000 genomes]
rs9309010	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37760000-37765000	Weak transcription	Fetal Heart	heart
2	chr2:37762600-37763600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr2:37762600-37763600	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr2:37762600-37763600	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr2:37762600-37763600	Active TSS	Primary hematopoietic stem cells	blood
6	chr2:37762600-37763600	Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr2:37762600-37763600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:37762600-37763600	Active TSS	A549	lung
9	chr2:37762600-37763600	Active TSS	GM12878-XiMat	blood
10	chr2:37762800-37763200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:37762800-37763400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:37762800-37763400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr2:37762800-37763400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr2:37762800-37763600	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr2:37762800-37763600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr2:37762800-37763600	Active TSS	H1 Cell Line	embryonic stem cell
17	chr2:37762800-37763600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:37762800-37763600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr2:37762800-37763600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr2:37762800-37763600	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr2:37762800-37763600	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr2:37762800-37763600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:37762800-37763600	Active TSS	Primary B cells from peripheral blood	blood
24	chr2:37762800-37763600	Active TSS	Primary T cells from cord blood	blood
25	chr2:37762800-37763600	Active TSS	Primary T cells fromperipheralblood	blood
26	chr2:37762800-37763600	Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr2:37762800-37763600	Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr2:37762800-37763600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr2:37762800-37763600	Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr2:37762800-37763600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr2:37762800-37763600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:37762800-37763600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr2:37762800-37763600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:37762800-37763600	Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr2:37762800-37763600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr2:37762800-37763600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:37762800-37763600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:37762800-37763600	Active TSS	Adipose Nuclei	Adipose
39	chr2:37762800-37763600	Active TSS	Liver	Liver
40	chr2:37762800-37763600	Active TSS	Brain Cingulate Gyrus	brain
41	chr2:37762800-37763600	Active TSS	Brain Germinal Matrix	brain
42	chr2:37762800-37763600	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr2:37762800-37763600	Active TSS	Duodenum Mucosa	Duodenum
44	chr2:37762800-37763600	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr2:37762800-37763600	Active TSS	Fetal Brain Female	brain
46	chr2:37762800-37763600	Active TSS	Fetal Intestine Large	intestine
47	chr2:37762800-37763600	Active TSS	Fetal Intestine Small	intestine
48	chr2:37762800-37763600	Active TSS	Fetal Kidney	kidney
49	chr2:37762800-37763600	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr2:37762800-37763600	Active TSS	Fetal Thymus	thymus

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