Variant report

Variant	rs6718639
Chromosome Location	chr2:33812802-33812803
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10168254	0.83[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10173763	0.85[JPT][hapmap]
rs10197783	0.86[JPT][hapmap]
rs11066	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1375198	0.83[CEU][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375199	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1448559	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2367811	0.95[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs3023	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4670217	0.81[EUR][1000 genomes]
rs6708570	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6740336	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6757234	0.91[JPT][hapmap]
rs723241	0.90[JPT][hapmap]
rs723242	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6718639	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
3	chr2:33807000-33818200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:33807400-33814000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:33807400-33817600	Weak transcription	Fetal Brain Male	brain
7	chr2:33807600-33813800	Strong transcription	HSMM	muscle
8	chr2:33807600-33821000	Strong transcription	NH-A	brain
9	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
10	chr2:33808200-33813800	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr2:33808200-33814600	Strong transcription	NHDF-Ad	bronchial
12	chr2:33808200-33820600	Strong transcription	Dnd41	blood
13	chr2:33808400-33813600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:33808400-33814000	Strong transcription	Fetal Muscle Leg	muscle
15	chr2:33808400-33822600	Weak transcription	Fetal Heart	heart
16	chr2:33808600-33813000	Strong transcription	Adipose Nuclei	Adipose
17	chr2:33808600-33813200	Strong transcription	Osteobl	bone
18	chr2:33808600-33813400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr2:33808600-33813600	Strong transcription	GM12878-XiMat	blood
20	chr2:33808600-33813600	Strong transcription	HSMMtube	muscle
21	chr2:33808600-33818800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr2:33808600-33820200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr2:33808600-33820400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr2:33808600-33820400	Strong transcription	HUVEC	blood vessel
25	chr2:33808600-33820600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr2:33808600-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:33808600-33821000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:33808800-33813000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr2:33808800-33813000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr2:33808800-33813600	Strong transcription	Fetal Thymus	thymus
31	chr2:33808800-33814000	Strong transcription	Placenta	Placenta
32	chr2:33808800-33814600	Strong transcription	Liver	Liver
33	chr2:33808800-33815800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:33808800-33816600	Strong transcription	A549	lung
35	chr2:33808800-33820400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr2:33808800-33820400	Strong transcription	Fetal Intestine Large	intestine
37	chr2:33808800-33820800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr2:33808800-33820800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr2:33809000-33813000	Strong transcription	Brain Cingulate Gyrus	brain
40	chr2:33809000-33813800	Strong transcription	HepG2	liver
41	chr2:33809000-33820200	Strong transcription	Primary B cells from cord blood	blood
42	chr2:33809000-33820200	Strong transcription	Primary T cells from cord blood	blood
43	chr2:33809000-33820200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr2:33809000-33820200	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr2:33809000-33820600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr2:33809200-33813200	Strong transcription	Brain Anterior Caudate	brain
47	chr2:33809200-33814200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr2:33809200-33816600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:33809200-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:33809200-33823400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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