Variant report

Variant	rs6720111
Chromosome Location	chr2:21190435-21190436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10197075	0.95[AFR][1000 genomes]
rs10205849	0.86[YRI][hapmap]
rs12713554	0.89[ASW][hapmap];0.84[LWK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs13386279	0.88[AFR][1000 genomes]
rs693	0.81[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6720111	AHSP	trans	lymphoblastoid	seeQTL
rs6720111	PRDX2	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21181000-21191400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21189600-21195000	Weak transcription	Aorta	Aorta
3	chr2:21189800-21190600	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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