Variant report

Variant	rs67238811
Chromosome Location	chr4:56437711-56437712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56434841..56438469-chr4:56815010..56817687,3	K562	blood:

Variant related genes	Relation type
ENSG00000174799	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10012559	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10034170	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10866424	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11732481	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12509047	0.82[AMR][1000 genomes]
rs13133077	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13134079	0.82[AMR][1000 genomes]
rs1967078	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1979604	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1979605	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2101476	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2130038	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2130040	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2412658	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2412659	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2412661	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4336288	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4865012	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4865014	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56152424	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62310862	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62310866	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6554290	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6554291	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6822553	0.80[EUR][1000 genomes]
rs6830728	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6846764	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6848755	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6851971	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6853506	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6856004	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs716806	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73236153	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7659095	0.81[AMR][1000 genomes]
rs7660668	0.81[AMR][1000 genomes]
rs7665286	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7665846	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7683997	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7698022	0.82[AMR][1000 genomes]
rs972446	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9993599	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56432000-56442000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:56435200-56440600	Weak transcription	K562	blood
3	chr4:56435600-56441400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:56437400-56438600	Enhancers	Primary monocytes fromperipheralblood	blood

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