Variant report

Variant	rs6725045
Chromosome Location	chr2:33652817-33652818
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17012993	1.00[AMR][1000 genomes]
rs17038528	1.00[AMR][1000 genomes]
rs17038533	1.00[AMR][1000 genomes]
rs3845776	1.00[AMR][1000 genomes]
rs56191261	1.00[AMR][1000 genomes]
rs57043920	1.00[AMR][1000 genomes]
rs57555315	1.00[AMR][1000 genomes]
rs58019979	1.00[AMR][1000 genomes]
rs58447746	1.00[AMR][1000 genomes]
rs59802064	1.00[AMR][1000 genomes]
rs60690063	1.00[AMR][1000 genomes]
rs60756139	1.00[AMR][1000 genomes]
rs61163843	1.00[AMR][1000 genomes]
rs61332576	1.00[AMR][1000 genomes]
rs6706960	1.00[AMR][1000 genomes]
rs6707278	1.00[AMR][1000 genomes]
rs6710588	1.00[AMR][1000 genomes]
rs6719885	1.00[AMR][1000 genomes]
rs6739497	1.00[AMR][1000 genomes]
rs6752263	1.00[AMR][1000 genomes]
rs73925003	1.00[AMR][1000 genomes]
rs73925009	1.00[AMR][1000 genomes]
rs73925011	1.00[AMR][1000 genomes]
rs73925681	1.00[AMR][1000 genomes]
rs73925695	1.00[AMR][1000 genomes]
rs73925697	1.00[AMR][1000 genomes]
rs73925698	1.00[AMR][1000 genomes]
rs73925700	1.00[AMR][1000 genomes]
rs73926609	1.00[AMR][1000 genomes]
rs73927363	1.00[AMR][1000 genomes]
rs73927504	1.00[AMR][1000 genomes]
rs73927505	1.00[AMR][1000 genomes]
rs73927506	1.00[AMR][1000 genomes]
rs73927507	1.00[AMR][1000 genomes]
rs73927508	1.00[AMR][1000 genomes]
rs73929408	1.00[AMR][1000 genomes]
rs73929409	1.00[AMR][1000 genomes]
rs73929412	1.00[AMR][1000 genomes]
rs73929413	1.00[AMR][1000 genomes]
rs73929415	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv2762447	chr2:33643724-33674484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33645200-33667800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33645800-33661200	Weak transcription	Fetal Kidney	kidney
3	chr2:33650400-33653400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:33651800-33653400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:33652000-33661200	Weak transcription	Psoas Muscle	Psoas
6	chr2:33652000-33661200	Weak transcription	Right Atrium	heart
7	chr2:33652400-33655800	Weak transcription	NHLF	lung
8	chr2:33652400-33658600	Weak transcription	Fetal Heart	heart
9	chr2:33652400-33661200	Weak transcription	Right Ventricle	heart
10	chr2:33652400-33661200	Weak transcription	HSMM	muscle
11	chr2:33652800-33655000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:33652800-33655000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:33652800-33655800	Weak transcription	NHDF-Ad	bronchial
14	chr2:33652800-33661000	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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