Variant report

Variant	rs6725313
Chromosome Location	chr2:210714676-210714677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10174744	0.92[YRI][hapmap]
rs10205545	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs10206406	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843890	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843979	0.87[AMR][1000 genomes]
rs16843983	0.87[AMR][1000 genomes]
rs16843987	0.87[AMR][1000 genomes]
rs16843990	0.87[AMR][1000 genomes]
rs6758085	0.87[AMR][1000 genomes]
rs73076772	0.89[AMR][1000 genomes]
rs73076801	0.89[AMR][1000 genomes]
rs7562016	0.87[AMR][1000 genomes]
rs7599672	0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210686000-210720400	Weak transcription	Brain Angular Gyrus	brain
3	chr2:210705200-210718000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210705400-210715600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:210705600-210720200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:210706000-210715800	Weak transcription	Fetal Brain Female	brain
7	chr2:210706000-210719200	Weak transcription	Brain Anterior Caudate	brain
8	chr2:210707800-210718800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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