Variant report

Variant	rs6727534
Chromosome Location	chr2:33452789-33452790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10048782	1.00[AMR][1000 genomes]
rs10166821	1.00[AMR][1000 genomes]
rs10170332	1.00[YRI][hapmap]
rs10179329	1.00[AMR][1000 genomes]
rs10184897	1.00[AMR][1000 genomes]
rs10189539	1.00[AMR][1000 genomes]
rs10192129	1.00[AMR][1000 genomes]
rs10192944	1.00[AMR][1000 genomes]
rs10202001	1.00[AMR][1000 genomes]
rs10211394	1.00[AMR][1000 genomes]
rs13398513	1.00[AMR][1000 genomes]
rs13402045	1.00[AMR][1000 genomes]
rs59286165	1.00[AMR][1000 genomes]
rs6543702	1.00[AMR][1000 genomes]
rs6729956	1.00[AMR][1000 genomes]
rs6740275	1.00[AMR][1000 genomes]
rs6742773	1.00[AMR][1000 genomes]
rs6745742	1.00[AMR][1000 genomes]
rs6758391	1.00[AMR][1000 genomes]
rs72855789	1.00[AMR][1000 genomes]
rs9308933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33403800-33489800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33414600-33455400	Weak transcription	Fetal Stomach	stomach
3	chr2:33436800-33455000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:33442600-33467600	Weak transcription	Ovary	ovary
5	chr2:33442800-33453400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:33442800-33471400	Weak transcription	Psoas Muscle	Psoas
7	chr2:33446000-33455000	Weak transcription	Fetal Kidney	kidney
8	chr2:33446600-33454800	Weak transcription	A549	lung
9	chr2:33446600-33461200	Weak transcription	HUVEC	blood vessel
10	chr2:33446800-33461200	Weak transcription	Fetal Lung	lung
11	chr2:33447400-33468200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:33448400-33461400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:33449200-33454600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:33449200-33456200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:33449400-33453400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:33449400-33454600	Weak transcription	NHLF	lung
17	chr2:33449400-33454600	Weak transcription	Osteobl	bone
18	chr2:33449400-33461400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:33449400-33466200	Weak transcription	Fetal Heart	heart
20	chr2:33449400-33475400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:33449600-33454600	Weak transcription	NHDF-Ad	bronchial
22	chr2:33450800-33456400	Weak transcription	NH-A	brain
23	chr2:33450800-33461400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:33451200-33454600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr2:33451400-33461200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:33451800-33456000	Weak transcription	Aorta	Aorta
27	chr2:33451800-33466200	Weak transcription	Left Ventricle	heart
28	chr2:33452200-33453000	Genic enhancers	Muscle Satellite Cultured Cells	--
29	chr2:33452600-33453400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:33452600-33454400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:33452600-33455400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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