Variant report

Variant	rs67277928
Chromosome Location	chr7:124776704-124776705
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10464674	0.89[ASN][1000 genomes]
rs10954065	0.82[ASN][1000 genomes]
rs11532793	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11534064	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11536526	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056290	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1383748	0.81[ASN][1000 genomes]
rs1568883	0.91[ASN][1000 genomes]
rs17327014	0.91[ASN][1000 genomes]
rs17327715	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17387389	0.89[ASN][1000 genomes]
rs2054586	0.91[ASN][1000 genomes]
rs2293346	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4142718	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55723877	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55859595	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55890146	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55905546	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56012154	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56056794	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56069273	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56216989	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56269941	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66478705	0.89[ASN][1000 genomes]
rs66756015	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66852389	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67607629	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67680878	0.89[ASN][1000 genomes]
rs67817822	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945199	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73225498	0.83[ASN][1000 genomes]
rs73227531	0.89[ASN][1000 genomes]
rs9640831	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124774800-124777000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:124775800-124777200	Enhancers	HMEC	breast
3	chr7:124775800-124777600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:124775800-124778000	Enhancers	Hela-S3	cervix
5	chr7:124776000-124777400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:124776000-124778200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:124776200-124777400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:124776200-124777400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:124776200-124777400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:124776400-124777000	Enhancers	HUVEC	blood vessel
11	chr7:124776400-124777000	Enhancers	NHEK	skin
12	chr7:124776400-124777400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:124776400-124777400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:124776400-124777600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:124776400-124777800	Enhancers	NH-A	brain
16	chr7:124776600-124777200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:124776600-124777400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:124776600-124777400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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