Variant report

Variant	rs6728425
Chromosome Location	chr2:37624687-37624688
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37622799..37624882-chr2:38117428..38119710,2	MCF-7	breast:
2	chr2:37618498..37621396-chr2:37621786..37624740,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10187899	1.00[ASN][1000 genomes]
rs11675003	1.00[ASN][1000 genomes]
rs11675007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677182	1.00[ASN][1000 genomes]
rs11684584	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690616	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694420	1.00[ASN][1000 genomes]
rs11694425	1.00[ASN][1000 genomes]
rs11695993	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13383093	1.00[ASN][1000 genomes]
rs17020628	1.00[ASN][1000 genomes]
rs17020652	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020654	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020657	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020741	1.00[ASN][1000 genomes]
rs4390746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670710	1.00[ASN][1000 genomes]
rs4670712	1.00[ASN][1000 genomes]
rs4670715	1.00[ASN][1000 genomes]
rs4670716	1.00[ASN][1000 genomes]
rs56010298	1.00[ASN][1000 genomes]
rs56049744	1.00[ASN][1000 genomes]
rs58023647	1.00[ASN][1000 genomes]
rs58400888	1.00[ASN][1000 genomes]
rs60243594	1.00[ASN][1000 genomes]
rs60383893	1.00[ASN][1000 genomes]
rs6713585	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725241	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6753813	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924652	1.00[ASN][1000 genomes]
rs73924654	1.00[ASN][1000 genomes]
rs950296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37620600-37625600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:37623400-37625000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:37623400-37628200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:37623400-37629400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr2:37624200-37624800	Enhancers	GM12878-XiMat	blood

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