The 2.0 version of rSNPBase

Variant report

Variant rs6730109
Chromosome Location chr2:33370853-33370854
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:33358800-33371600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:33360000-33373000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr2:33360000-33378400 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr2:33360200-33372600 Weak transcription Liver Liver
5 chr2:33360200-33385800 Weak transcription Placenta Placenta
6 chr2:33362600-33382400 Weak transcription HUVEC blood vessel
7 chr2:33363200-33371200 Weak transcription Ovary ovary
8 chr2:33365400-33371200 Weak transcription NH-A brain
9 chr2:33365600-33375400 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr2:33367200-33384000 Weak transcription K562 blood
11 chr2:33367600-33371800 Enhancers Rectal Smooth Muscle rectum
12 chr2:33368200-33372800 Weak transcription Fetal Muscle Trunk muscle
13 chr2:33368400-33372400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr2:33368800-33371800 Enhancers Colon Smooth Muscle Colon
15 chr2:33368800-33372200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr2:33368800-33372600 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr2:33369200-33372200 Enhancers Fetal Heart heart
18 chr2:33369400-33371000 Enhancers NHLF lung
19 chr2:33369600-33371000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr2:33369600-33371000 Enhancers Muscle Satellite Cultured Cells --
21 chr2:33369600-33371200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr2:33369600-33371200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr2:33369600-33371200 Weak transcription Left Ventricle heart
24 chr2:33369600-33371200 Weak transcription Psoas Muscle Psoas
25 chr2:33369600-33371200 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr2:33369600-33373200 Enhancers Stomach Smooth Muscle stomach
27 chr2:33369600-33389800 Weak transcription Right Atrium heart
28 chr2:33369800-33371200 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr2:33369800-33372000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:33369800-33404000 Weak transcription Right Ventricle heart
31 chr2:33370000-33371200 Weak transcription Fetal Lung lung
32 chr2:33370400-33371400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr2:33370400-33371600 Flanking Active TSS NHDF-Ad bronchial
34 chr2:33370400-33371800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr2:33370400-33371800 Enhancers Fetal Stomach stomach
36 chr2:33370400-33372000 Enhancers Fetal Muscle Leg muscle
37 chr2:33370600-33371000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr2:33370600-33371200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr2:33370600-33371600 Enhancers Fetal Kidney kidney
40 chr2:33370800-33371400 Flanking Active TSS Osteobl bone
41 chr2:33370800-33371600 Active TSS Duodenum Smooth Muscle Duodenum
42 chr2:33370800-33371600 Enhancers HSMMtube muscle
43 chr2:33370800-33372600 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015