Variant report

Variant	rs67306087
Chromosome Location	chr15:76504599-76504600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76489717..76491571-chr15:76503812..76506764,2	K562	blood:
2	chr15:76503018..76504936-chr15:76506682..76510491,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12595211	0.97[AFR][1000 genomes]
rs12595717	0.91[AFR][1000 genomes]
rs12595738	0.81[AFR][1000 genomes]
rs12898415	0.91[AFR][1000 genomes]
rs12916022	0.97[AFR][1000 genomes]
rs1474117	0.84[AFR][1000 genomes]
rs34893715	0.91[AFR][1000 genomes]
rs35707798	0.91[AFR][1000 genomes]
rs7174889	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1054713	chr15:76460462-76505906	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs67306087	SCAPER	cis	Artery Tibial	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76486800-76516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:76489400-76519800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:76492000-76509600	Weak transcription	K562	blood
4	chr15:76492400-76510000	Strong transcription	Placenta	Placenta
5	chr15:76492600-76507000	Weak transcription	NH-A	brain
6	chr15:76492800-76506200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:76492800-76517600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:76492800-76526400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:76493200-76507800	Strong transcription	Fetal Stomach	stomach
10	chr15:76493600-76506800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:76493600-76526400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:76494600-76510400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:76495400-76510400	Strong transcription	Adipose Nuclei	Adipose
14	chr15:76495800-76508600	Strong transcription	A549	lung
15	chr15:76496200-76510400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:76497000-76518200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr15:76497400-76509400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:76497600-76505600	Weak transcription	Ovary	ovary
19	chr15:76498200-76506400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:76498200-76508800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr15:76498200-76509200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:76498200-76510200	Strong transcription	Fetal Intestine Large	intestine
23	chr15:76498200-76511000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr15:76498200-76511600	Strong transcription	Primary T cells from cord blood	blood
25	chr15:76498400-76510600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:76498600-76506000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:76498600-76510400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:76499200-76506800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:76499200-76509000	Weak transcription	Stomach Mucosa	stomach
30	chr15:76499200-76509400	Weak transcription	Brain Germinal Matrix	brain
31	chr15:76499200-76509600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:76499200-76516800	Weak transcription	Brain Angular Gyrus	brain
33	chr15:76499200-76527400	Weak transcription	Fetal Brain Male	brain
34	chr15:76499800-76508200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:76499800-76509000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:76500000-76510400	Strong transcription	Liver	Liver
37	chr15:76500000-76510400	Strong transcription	Spleen	Spleen
38	chr15:76500200-76505000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr15:76500200-76507800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr15:76500200-76508400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr15:76500200-76508400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:76500200-76510800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:76500400-76510400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr15:76500600-76508200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:76500600-76508200	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:76500600-76509600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:76500600-76534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:76500800-76507000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:76500800-76507600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:76500800-76508400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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