Variant report

Variant	rs6732191
Chromosome Location	chr2:63966634-63966635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63965360..63967631-chr2:63967788..63969459,2	MCF-7	breast:
2	chr2:63966027..63970127-chr2:64066490..64069650,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs60746057	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6704778	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6709123	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7585588	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63957400-63968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:63957400-63971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:63963400-63968200	Weak transcription	NHLF	lung
4	chr2:63964400-63967400	Weak transcription	Hela-S3	cervix
5	chr2:63964400-63974000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:63964600-63968200	Weak transcription	HSMMtube	muscle
7	chr2:63964800-63967000	Enhancers	HepG2	liver
8	chr2:63964800-63968200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:63964800-63968400	Weak transcription	NH-A	brain
10	chr2:63964800-63969800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:63965000-63969200	Weak transcription	Fetal Lung	lung
12	chr2:63965200-63968200	Weak transcription	HUVEC	blood vessel
13	chr2:63965200-63969600	Weak transcription	Pancreas	Pancrea
14	chr2:63965200-63970200	Weak transcription	Psoas Muscle	Psoas
15	chr2:63965400-63967800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:63965400-63967800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:63965400-63968000	Weak transcription	Adipose Nuclei	Adipose
18	chr2:63965400-63968400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr2:63965400-63969200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:63965400-63969400	Weak transcription	Fetal Muscle Leg	muscle
21	chr2:63965600-63969200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:63965800-63967600	Weak transcription	A549	lung
23	chr2:63965800-63967800	Weak transcription	Osteobl	bone
24	chr2:63965800-63968000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr2:63965800-63968200	Weak transcription	NHDF-Ad	bronchial
26	chr2:63966000-63967800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:63966000-63967800	Weak transcription	HMEC	breast
28	chr2:63966000-63968000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr2:63966000-63968000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:63966000-63968200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:63966200-63967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr2:63966200-63967800	Weak transcription	Liver	Liver
33	chr2:63966200-63967800	Weak transcription	NHEK	skin
34	chr2:63966400-63968000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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